SMTL ID : 5e0g.1

1.20 A resolution structure of Norovirus 3CL protease in complex with a triazole-based macrocyclic (17-mer) inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: T.11, L.12, R.15 Ligand excluded by PLIP

1 x 5LG: (phenylmethyl) ~{N}-[(8~{S},11~{S},14~{S})-8-(hydroxymethyl)-11-(2-methylpropyl)-5,10,13-tris(oxidanylidene)-1,4,9,12,17,18-hexazabicyclo[14.2.1]nonadeca-16(19),17-dien-14-yl]carbamate(Covalent)

5LG.2: 15 residues within 4Å: Chain A: H.37, I.116, Q.117, R.119, G.140, T.141, I.142, P.143, C.146, H.164, A.165, A.166, A.167, T.168, K.169 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.116, A:R.119, A:A.167 Hydrogen bonds: A:Q.117, A:A.165, A:A.167, A:A.167, A:A.167 Water bridges: A:Q.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weerawarna, P.M. et al., Structure-based design and synthesis of triazole-based macrocyclic inhibitors of norovirus protease: Structural, biochemical, spectroscopic, and antiviral studies. Eur.J.Med.Chem. (2016)

Release Date

2016-05-04

Peptides

Norovirus 3C-like protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Norovirus 3C-like protease

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