SMTL ID : 5tg1.1

1.40 A resolution structure of Norovirus 3CL protease in complex with the a m-chlorophenyl substituted macrocyclic inhibitor (17-mer)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: R.119, L.120 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: T.11, L.12, R.15 Ligand excluded by PLIP

1 x V56: (4S,7S,17S)-17-(3-chlorophenyl)-7-(hydroxymethyl)-4-(2-methylpropyl)-1-oxa-3,6,11-triazacycloheptadecane-2,5,10-trione(Covalent)

V56.3: 14 residues within 4Å: Chain A: H.37, I.116, Q.117, V.121, G.140, T.141, I.142, P.143, C.146, A.165, A.166, A.167, T.168, V.175 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.116, A:V.121 Hydrogen bonds: A:Q.117, A:A.165, A:A.167, A:A.167 Water bridges: A:H.37, A:Q.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Damalanka, V.C. et al., Design, synthesis, and evaluation of a novel series of macrocyclic inhibitors of norovirus 3CL protease. Eur J Med Chem (2016)

Release Date

2017-01-11

Peptides

3C-LIKE PROTEASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3C-LIKE PROTEASE

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