SMTL ID : 5wej.1 (1 other biounit)

1.95 A resolution structure of Norovirus 3CL protease in complex with a dipeptidyl oxazolidinone-based inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x V45: (2S)-2-{(5S)-5-[(3-chlorophenyl)methyl]-2-oxo-1,3-oxazolidin-3-yl}-4-methyl-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}pentanamide(Covalent)

V45.1: 11 residues within 4Å: Chain A: H.37, I.116, V.121, T.141, I.142, P.143, C.146, H.164, A.165, A.166, A.167 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.121, A:P.143 Hydrogen bonds: A:T.141, A:T.141, A:A.165, A:A.167 Water bridges: A:C.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Damalanka, V.C. et al., Structure-guided design, synthesis and evaluation of oxazolidinone-based inhibitors of norovirus 3CL protease. Eur J Med Chem (2017)

Release Date

2017-12-13

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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