SMTL ID : 5e1c.1

Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative dimethyl {(1S)-3-[bis(4-hydroxyphenyl)methylidene]cyclohexyl}propanedioate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 5K8: dimethyl {(1S)-3-[bis(4-hydroxyphenyl)methylidene]cyclohexyl}propanedioate(Non-covalent)

5K8.1: 21 residues within 4Å: Chain A: M.46, L.49, T.50, A.53, E.56, L.87, L.90, L.94, R.97, F.107, E.122, G.123, M.124, I.127, F.128, L.131, G.224, H.227, L.228, L.239, L.243 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.49, A:A.53, A:A.53, A:L.87, A:L.90, A:L.94, A:F.107, A:F.107, A:I.127, A:F.128, A:L.131 Hydrogen bonds: A:T.50, A:E.56, A:R.97 Water bridges: A:R.97 Salt bridges: A:H.227 pi-Stacking: A:F.107 5K8.2: 17 residues within 4Å: Chain B: M.46, L.49, T.50, A.53, E.56, L.90, R.97, F.107, E.122, M.124, F.128, L.131, G.224, H.227, L.228, M.231, L.243 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.49, B:A.53, B:L.90, B:F.107, B:F.107, B:F.128, B:L.131 Hydrogen bonds: B:T.50, B:E.56, B:R.97 Water bridges: B:L.94 Salt bridges: B:H.227 pi-Stacking: B:F.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nwachukwu, J.C. et al., Predictive features of ligand-specific signaling through the estrogen receptor. Mol.Syst.Biol. (2016)

Release Date

2016-05-04

Peptides

Estrogen receptor: AB
Nuclear receptor coactivator 2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Estrogen receptor

Nuclear receptor coactivator 2

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