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SMTL ID : 5tmz.1

Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with the estradiol derivative, (8S,9S,13S,14S,17S)-16-(3-methoxybenzyl)-13-methyl-7,8,9,11,12,13,14,15,16,17-decahydro-6H-cyclopenta[a]phenanthrene-3,17-diol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 7FQ: (9beta,13alpha,14beta,16alpha,17alpha)-16-[(4-methoxyphenyl)methyl]estra-1,3,5(10)-triene-3,17-diol(Non-covalent)

7FQ.1:	14 residues within 4Å: Chain A: M.46, L.49, A.53, E.56, L.90, M.91, L.94, R.97, F.107, M.124, I.127, H.227, L.228, M.231 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.53, A:L.90, A:L.94, A:L.228 Hydrogen bonds: A:L.90, A:R.97 Water bridges: A:R.97 pi-Stacking: A:F.107
7FQ.2:	12 residues within 4Å: Chain C: M.46, L.49, A.53, E.56, L.90, M.91, L.94, R.97, M.124, I.127, H.227, M.231 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:L.49, C:A.53, C:L.90, C:L.94, C:L.94 Hydrogen bonds: C:L.90, C:R.97 Water bridges: C:R.97 pi-Stacking: C:F.107

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Nwachukwu, J.C. et al., Systems Structural Biology Analysis of Ligand Effects on ER alpha Predicts Cellular Response to Environmental Estrogens and Anti-hormone Therapies. Cell Chem Biol (2017)

Release Date

2017-01-18

Peptides

Estrogen receptor: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
C

D
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Estrogen receptor

Nuclear receptor coactivator 2

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