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SMTL ID : 5tmr.1

Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with the Cyclofenil-ASC derivative, ethyl (E)-3-(4-(cyclohexylidene(4-hydroxyphenyl)methyl)phenyl)acrylate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 7FD: ethyl 3-{4-[cyclohexylidene(4-hydroxyphenyl)methyl]phenyl}prop-2-enoate(Non-covalent)

7FD.1:	15 residues within 4Å: Chain A: M.46, L.49, T.50, A.53, E.56, L.90, M.91, L.94, R.97, F.107, M.124, I.127, L.131, L.228, L.243 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.53, A:A.53, A:L.90, A:L.94, A:F.107, A:I.127, A:L.131, A:L.228, A:L.228, A:L.243 Hydrogen bonds: A:L.90, A:R.97 Water bridges: A:L.94
7FD.2:	11 residues within 4Å: Chain C: L.49, T.50, A.53, E.56, L.90, R.97, M.124, I.127, L.131, L.228, L.243 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:L.49, C:A.53, C:A.53, C:L.90, C:I.127, C:L.131, C:L.228, C:L.228, C:L.243 Hydrogen bonds: C:L.90, C:R.97 Water bridges: C:L.94 pi-Stacking: C:F.107

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Nwachukwu, J.C. et al., Systems Structural Biology Analysis of Ligand Effects on ER alpha Predicts Cellular Response to Environmental Estrogens and Anti-hormone Therapies. Cell Chem Biol (2017)

Release Date

2017-01-18

Peptides

Estrogen receptor: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
C

D
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Estrogen receptor

Nuclear receptor coactivator 2

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1l2i.1 | 1l2i.2 | 1mv9.1 | 1mvc.1 | 1mzn.1 | 1mzn.2 | 1t65.1 | 1x7e.1 | 1x7r.1 | 1zky.1 | 2b1v.1 | 2b1z.1 | 2b23.1 | 2fai.1 | 2g44.1 | 2g5o.1 | 2p15.1 | 2p1t.1 | 2p1u.1 | 2p1v.1 | 2q6j.1 | 2qa6.1 | 2qa8.1 | 2qab.1 | 2qgt.1 | 2qgw.1 | 2qh6.1 | 2qr9.1 | 2qse.1 | 2qxm.1 more...less...

2qzo.1 | 2zxz.1 | 2zy0.1 | 3a9e.1 | 3a9e.2 | 3e94.1 | 3erd.1 | 3hlv.1 | 3hm1.1 | 3kwy.1 | 3l03.1 | 3o1d.1 | 3o1e.1 | 3q95.1 | 3q95.2 | 4fhh.1 | 4fhi.1 | 4ia1.1 | 4ia2.1 | 4ia3.1 | 4ia7.1 | 4k4j.1 | 4k6i.1 | 4nqa.1 | 4nqa.2 | 4oc7.1 | 4poh.1 | 4poj.1 | 4pp3.1 | 4pp5.1 | 4pxm.1 | 4q13.1 | 4rfw.1 | 4rmc.1 | 4rmd.1 | 4rme.1 | 4ruo.1 | 4zn7.1 | 4zn9.1 | 4znh.1 | 4zns.1 | 4znt.1 | 4znu.1 | 4znv.1 | 4znw.1 | 4zsh.1 | 5di7.1 | 5did.1 | 5die.1 | 5dig.1 | 5dk9.1 | 5dkb.1 | 5dke.1 | 5dkg.1 | 5dks.1 | 5dl4.1 | 5dlr.1 | 5dmc.1 | 5dmf.1 | 5dp0.1 | 5drj.1 | 5drm.1 | 5dtv.1 | 5du5.1 | 5due.1 | 5dug.1 | 5duh.1 | 5dvs.1 | 5dvv.1 | 5dwe.1 | 5dwg.1 | 5dwi.1 | 5dwj.1 | 5dxk.1 | 5dxm.1 | 5dxp.1 | 5dxq.1 | 5dxr.1 | 5dy8.1 | 5dyb.1 | 5dyd.1 | 5dz0.1 | 5dz1.1 | 5dz3.1 | 5dzh.1 | 5dzi.1 | 5e0w.1 | 5e0x.1 | 5e14.1 | 5e15.1 | 5e19.1 | 5e1c.1 | 5egv.1 | 5ehj.1 | 5ei1.1 | 5eit.1 | 5kcc.1 | 5kcd.1 | 5kce.1 | 5kcf.1 | 5kct.1 | 5kcu.1 | 5kcw.1 | 5kd9.1 | 5kr9.1 | 5kra.1 | 5kra.2 | 5krc.1 | 5krf.1 | 5krh.1 | 5kri.1 | 5krj.1 | 5krk.1 | 5krl.1 | 5krm.1 | 5kro.1 | 5lga.1 | 5lyq.1 | 5mj5.1 | 5t1z.1 | 5tld.1 | 5tlf.1 | 5tlg.1 | 5tll.1 | 5tlm.1 | 5tlo.1 | 5tlp.1 | 5tlt.1 | 5tlu.1 | 5tlv.1 | 5tlx.1 | 5tly.1 | 5tm1.1 | 5tm2.1 | 5tm3.1 | 5tm4.1 | 5tm5.1 | 5tm6.1 | 5tm7.1 | 5tm8.1 | 5tm9.1 | 5tml.1 | 5tmm.1 | 5tmo.1 | 5tmq.1 | 5tms.1 | 5tmt.1 | 5tmu.1 | 5tmv.1 | 5tmw.1 | 5tmz.1 | 5tn1.1 | 5tn3.1 | 5tn4.1 | 5tn5.1 | 5tn6.1 | 5tn7.1 | 5tn8.1 | 5u2b.1 | 5u2b.2 | 5u2b.3 | 5u2d.1 | 6czn.1 | 6lb4.1 | 6lb5.1 | 6lb6.1 | 6sti.1 | 7jhd.1 | 7nke.1 | 7pdq.1 | 7pdt.1 | 7t2x.1 | 7t2x.2 | 7uw2.1 | 7uw4.1 | 7w3p.1 | 7w3q.1 | 8ev1.1 | 8ev1.2 | 8ev2.1 | 8ev2.2 | 8p9x.1 | 8pwd.1 | 8pwe.1 | 8pwf.1 | 8pwm.1 | 8pz6.1 | 8pz7.1 | 8pz8.1 | 8pz9.1 | 8pzb.1 | 9ez1.1 | 9ez2.1

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