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SMTL ID : 5kce.1

Crystal Structure of the ER-alpha Ligand-binding Domain (Y537S) in Complex with an N-methyl, 2-chlorobenzyl OBHS-N derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-2-2-mer

Ligands

3 x OB3: (1S,2R,4S)-N-(2-chlorophenyl)-5,6-bis(4-hydroxyphenyl)-N-methyl-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonamide(Non-covalent)

OB3.1:	24 residues within 4Å: Chain A: M.46, L.49, T.50, A.53, E.56, L.90, M.91, L.94, R.97, F.107, V.121, E.122, G.123, M.124, I.127, F.128, L.131, G.224, H.227, L.228, M.231, L.239, L.243 Ligands: OB3.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.49, A:A.53, A:L.90, A:L.94, A:L.94, A:F.107, A:V.121, A:M.124, A:L.131, A:H.227 Hydrogen bonds: A:L.90, A:R.97 Water bridges: A:R.97 pi-Stacking: A:F.107
OB3.2:	23 residues within 4Å: Chain A: M.46, L.49, T.50, A.53, E.56, L.90, M.91, L.94, R.97, F.107, V.121, G.123, M.124, I.127, F.128, L.131, G.224, H.227, L.228, M.231, L.239, L.243 Ligands: OB3.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.49, A:A.53, A:L.90, A:L.94, A:L.94, A:F.107, A:V.121, A:L.131, A:L.228 Hydrogen bonds: A:L.90, A:R.97 Water bridges: A:R.97 pi-Stacking: A:F.107
OB3.3:	19 residues within 4Å: Chain B: M.46, L.49, T.50, A.53, E.56, L.90, M.91, L.94, R.97, F.107, V.121, E.122, G.123, M.124, I.127, G.224, H.227, L.228, L.239 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.49, B:A.53, B:L.90, B:L.94, B:L.94, B:F.107, B:V.121, B:M.124, B:I.127, B:H.227 Hydrogen bonds: B:L.90, B:R.97 Water bridges: B:R.97 pi-Stacking: B:F.107

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Srinivasan, S. et al., Full antagonism of the estrogen receptor without a prototypical ligand side chain. Nat. Chem. Biol. (2017)

Release Date

2016-11-16

Peptides

Estrogen receptor: AB
Nuclear receptor coactivator 2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Estrogen receptor

Nuclear receptor coactivator 2

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