SMTL ID : 5fb1.1

Crystal Structure of a PHD finger bound to histone H3 K9me3 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.11, C.14, H.31, C.34 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.14, A:H.31, A:C.34 ZN.2: 4 residues within 4Å: Chain A: C.23, C.26, C.48, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.23, A:C.26, A:C.48, A:C.51

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.3: 4 residues within 4Å: Chain A: R.19, H.31, E.32, H.33 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.33, A:C.34 Water bridges: A:R.19, A:H.31, A:E.32 Salt bridges: A:R.19, A:R.19, A:H.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Multifaceted Histone H3 Methylation and Phosphorylation Readout by the Plant Homeodomain Finger of Human Nuclear Antigen Sp100C. J.Biol.Chem. (2016)

Release Date

2016-05-04

Peptides

Nuclear autoantigen Sp-100: A
Peptide from Histone H3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Nuclear autoantigen Sp-100

Peptide from Histone H3

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