SMTL ID : 5fdz.1

Crystal structure of human PCAF bromodomain in complex with compound BDOMB00091a (compound 14)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x 5X0: ~{N}-methyl-2-(oxan-4-yloxy)-5-(2-oxidanylidene-2-phenylazanyl-ethoxy)benzamide(Non-covalent)

5X0.1: 10 residues within 4Å: Chain A: W.34, P.35, F.36, V.40, E.44, Y.48, Y.90, N.91, P.92, Y.97 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.44, A:P.92, A:Y.97 Hydrogen bonds: A:P.35, A:N.91, A:N.91 Water bridges: A:M.37 5X0.4: 10 residues within 4Å: Chain B: P.35, F.36, V.40, E.44, A.45, Y.48, Y.90, N.91, P.92, Y.97 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:E.44, B:Y.90, B:P.92, B:Y.97 Hydrogen bonds: B:P.35, B:N.91, B:N.91 pi-Stacking: B:Y.97

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain B: Y.17, K.21 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.21 EDO.3: 1 residues within 4Å: Chain B: F.54 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Structure-Based Identification of Inhibitory Fragments Targeting the p300/CBP-Associated Factor Bromodomain. J.Med.Chem. (2016)

Release Date

2016-01-13

Peptides

Histone acetyltransferase KAT2B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone acetyltransferase KAT2B

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