SMTL ID : 5fnc.1

Dynamic Undocking and the Quasi-Bound State as tools for Drug Design

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x IEE: 6-CHLORO-4-N-[(4-METHYLPHENYL)METHYL]PYRIMIDINE- 2,4-DIAMINE(Non-covalent)

IEE.1: 13 residues within 4Å: Chain A: N.51, S.52, A.55, D.93, I.96, G.97, M.98, L.107, A.111, G.135, F.138, Y.139, T.184 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.107, A:A.111, A:F.138, A:F.138, A:Y.139 Hydrogen bonds: A:S.52, A:T.184 Water bridges: A:N.51, A:N.51 Salt bridges: A:D.93 Halogen bonds: A:G.97 IEE.5: 13 residues within 4Å: Chain B: N.51, S.52, A.55, D.93, I.96, G.97, M.98, L.107, A.111, G.135, F.138, Y.139, T.184 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.107, B:A.111, B:F.138, B:F.138, B:Y.139 Hydrogen bonds: B:S.52, B:T.184 Water bridges: B:N.51, B:N.51 Salt bridges: B:D.93 Halogen bonds: B:G.97

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: D.54 Chain B: D.54 Ligands: SO4.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.54 SO4.3: 5 residues within 4Å: Chain A: A.21, F.22, Q.23, I.26, G.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.23, A:Q.23 SO4.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.6: 3 residues within 4Å: Chain A: D.54 Chain B: D.54 Ligands: SO4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.54 SO4.7: 5 residues within 4Å: Chain B: A.21, F.22, Q.23, I.26, G.108 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.23, B:Q.23 SO4.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruiz-Carmona, S. et al., Dynamic undocking and the quasi-bound state as tools for drug discovery. Nat Chem (2017)

Release Date

2016-11-23

Peptides

HEAT SHOCK PROTEIN, HSP90-ALPHA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

HEAT SHOCK PROTEIN, HSP90-ALPHA

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