SMTL ID : 6elp.1

Estimation of relative drug-target residence times by random acceleration molecular dynamics simulation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x BA8: 4-[2-(2-chlorophenyl)pyrazol-3-yl]-6-(2-pyridin-2-ylethyl)benzene-1,3-diol(Non-covalent)

BA8.1: 15 residues within 4Å: Chain A: L.48, N.51, S.52, D.54, A.55, D.93, I.96, G.97, M.98, L.107, F.138, Y.139, W.162, T.184, V.186 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:D.54, A:A.55, A:L.107, A:F.138, A:T.184 Hydrogen bonds: A:N.51, A:D.93 Water bridges: A:G.95 pi-Stacking: A:F.138, A:W.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kokh, D.B. et al., Estimation of Drug-Target Residence Times by tau-Random Acceleration Molecular Dynamics Simulations. J Chem Theory Comput (2018)

Release Date

2018-05-30

Peptides

Heat shock protein HSP 90-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heat shock protein HSP 90-alpha

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