SMTL ID : 6eya.1

Estimation of relative drug-target residence times by random acceleration molecular dynamics simulation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x C4K: ~{N}-(1,3-benzodioxol-5-yl)-~{N}-methyl-3-[(3-methylphenyl)methyl]-6-oxidanyl-1~{H}-indazole-5-carboxamide(Non-covalent)

C4K.1: 16 residues within 4Å: Chain A: L.48, N.51, S.52, D.54, A.55, D.93, I.96, G.97, M.98, L.103, N.106, F.138, V.150, W.162, T.184, V.186 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:N.51, A:L.103, A:N.106, A:F.138, A:V.150, A:W.162 Hydrogen bonds: A:N.51, A:G.97 Water bridges: A:L.48, A:G.95, A:T.184 pi-Stacking: A:F.138 pi-Cation interactions: A:K.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kokh, D.B. et al., Estimation of Drug-Target Residence Times by tau-Random Acceleration Molecular Dynamics Simulations. J Chem Theory Comput (2018)

Release Date

2018-05-30

Peptides

Heat shock protein HSP 90-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heat shock protein HSP 90-alpha

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