SMTL ID : 5fnd.1

Dynamic Undocking and the Quasi-Bound State as tools for Drug Design

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x IQ5: N-(2-AZANYL-6-METHYL-1,3-BENZOTHIAZOL-5-YL)ETHANAMIDE(Non-covalent)

IQ5.1: 11 residues within 4Å: Chain A: S.52, A.55, K.58, D.93, I.96, G.97, M.98, D.102, L.107, G.108, T.184 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.55 Hydrogen bonds: A:K.58, A:D.93, A:G.97, A:T.184 Water bridges: A:A.55, A:D.93, A:G.95 IQ5.4: 11 residues within 4Å: Chain B: S.52, A.55, K.58, D.93, I.96, G.97, M.98, D.102, L.107, G.108, T.184 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:A.55 Hydrogen bonds: B:K.58, B:D.93, B:G.97, B:T.184 Water bridges: B:A.55, B:D.93, B:G.95

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: E.75, H.77, N.79 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.75, A:N.79, A:N.79 Water bridges: A:H.77, A:T.219 Salt bridges: A:H.77 SO4.3: 3 residues within 4Å: Chain A: D.54 Chain B: D.54 Ligands: SO4.6 No protein-ligand interaction detected (PLIP) SO4.5: 3 residues within 4Å: Chain B: E.75, H.77, N.79 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.75, B:N.79, B:N.79 Water bridges: B:H.77, B:T.219 Salt bridges: B:H.77 SO4.6: 3 residues within 4Å: Chain A: D.54 Chain B: D.54 Ligands: SO4.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruiz-Carmona, S. et al., Dynamic undocking and the quasi-bound state as tools for drug discovery. Nat Chem (2017)

Release Date

2016-11-23

Peptides

HEAT SHOCK PROTEIN, HSP90-ALPHA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

HEAT SHOCK PROTEIN, HSP90-ALPHA

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