5fp5.1 | SWISS-MODEL Template Library

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SMTL ID : 5fp5.1

Structure of cyclin-dependent kinase 2 with small-molecule ligand 4- fluorobenzoic acid (AT222) in an alternate binding site.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

2 x 1Y6: 4-fluorobenzoic acid(Non-covalent)

1Y6.1:	12 residues within 4Å: Chain A: I.10, V.18, A.31, K.33, V.64, F.80, E.81, F.82, L.83, L.134, A.144, D.145 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.31, A:V.64, A:F.80 Hydrogen bonds: A:D.145 Water bridges: A:F.146 Halogen bonds: A:L.83
1Y6.2:	5 residues within 4Å: Chain A: L.219, V.226, R.245, H.268, Y.269 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.226 Hydrogen bonds: A:Y.269 Water bridges: A:R.245, A:R.245, A:R.245, A:D.270 Salt bridges: A:R.245, A:H.268 pi-Cation interactions: A:R.245

1 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.3:

4 residues within 4Å:

Chain A: M.1, F.4, L.32, Y.77

2 PLIP interactions:

2 interactions with chain A

Hydrophobic interactions: A:L.32, A:Y.77

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ludlow, R.F. et al., Detection of Secondary Binding Sites in Proteins Using Fragment Screening. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-12-09

Peptides

CYCLIN-DEPENDENT KINASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

CYCLIN-DEPENDENT KINASE 2

Related Entries With Identical Sequence

1aq1.1 | 1buh.1 | 1ckp.1 | 1di8.1 | 1dm2.1 | 1f5q.1 | 1f5q.2 | 1fin.1 | 1fin.2 | 1fq1.1 | 1fvt.1 | 1fvv.1 | 1fvv.2 | 1g5s.1 | 1gih.1 | 1h01.1 | 1h0v.1 | 1h0w.1 | 1hck.1 | 1hcl.1 | 1jst.1 | 1jst.2 | 1jst.3 | 1jsu.1 | 1jsv.1 | 1jvp.1 | 1ke5.1 | 1ke6.1 | 1ke7.1 | 1ke8.1 more...less...

1ke9.1 | 1okv.1 | 1okv.2 | 1okw.1 | 1okw.2 | 1ol1.1 | 1ol1.2 | 1ol2.1 | 1ol2.2 | 1p2a.1 | 1pf8.1 | 1pw2.1 | 1pxi.1 | 1pxj.1 | 1pxk.1 | 1pxl.1 | 1pxm.1 | 1pxn.1 | 1pxo.1 | 1pxp.1 | 1pye.1 | 1r78.1 | 1urc.1 | 1urc.2 | 1vyz.1 | 1w0x.1 | 1wcc.1 | 1y8y.1 | 1y91.1 | 1ykr.1 | 2a0c.1 | 2a4l.1 | 2b52.1 | 2b53.1 | 2b54.1 | 2b55.1 | 2bhe.1 | 2bhh.1 | 2btr.1 | 2bts.1 | 2c5n.1 | 2c5n.2 | 2c5o.1 | 2c5o.2 | 2c5v.1 | 2c5v.2 | 2c5x.1 | 2c5x.2 | 2c5y.1 | 2c68.1 | 2c69.1 | 2c6i.1 | 2c6k.1 | 2c6l.1 | 2c6m.1 | 2c6o.1 | 2c6t.1 | 2c6t.2 | 2cjm.1 | 2cjm.2 | 2clx.1 | 2duv.1 | 2exm.1 | 2fvd.1 | 2i40.1 | 2i40.2 | 2j9m.1 | 2r64.1 | 2uue.1 | 2uue.2 | 2uzb.1 | 2uzb.2 | 2uzd.1 | 2uzd.2 | 2uze.1 | 2uze.2 | 2uzl.1 | 2uzl.2 | 2uzn.1 | 2uzo.1 | 2v0d.1 | 2v22.1 | 2v22.2 | 2vta.1 | 2vth.1 | 2vti.1 | 2vtj.1 | 2vtl.1 | 2vtm.1 | 2vtn.1 | 2vto.1 | 2vtp.1 | 2vtq.1 | 2vtr.1 | 2vts.1 | 2vtt.1 | 2vu3.1 | 2w05.1 | 2w1h.1 | 2wev.1 | 2wev.2 | 2wfy.1 | 2wfy.2 | 2whb.1 | 2whb.2 | 2x1n.1 | 2x1n.2 | 2xmy.1 | 2xnb.1 | 3eid.1 | 3eid.2 | 3ej1.1 | 3ej1.2 | 3eoc.1 | 3eoc.2 | 3f5x.1 | 3f5x.2 | 3f5x.3 | 3f5x.4 | 3fz1.1 | 3le6.1 | 3lfn.1 | 3lfq.1 | 3lfs.1 | 3ns9.1 | 3s2p.1 | 3ti1.1 | 3tiy.1 | 3tiz.1 | 3uli.1 | 3unj.1 | 3unk.1 | 3wbl.1 | 4bgh.1 | 4d1x.1 | 4d1z.1 | 4fx3.1 | 4fx3.2 | 4ii5.1 | 4ii5.2 | 4kd1.1 | 4lyn.1 | 4rj3.1 | 5and.1 | 5ane.1 | 5ang.1 | 5ani.1 | 5anj.1 | 5ank.1 | 5ano.1 | 5d1j.1 | 5fp6.1 | 5iev.1 | 5iex.1 | 5iey.1 | 5if1.1 | 5if1.2 | 5jq5.1 | 5jq8.1 | 6p3w.1 | 6p3w.2 | 7b5l.1 | 7b5r.1 | 7kjs.1 | 7m2f.1 | 7rwe.1 | 7rxo.1 | 7s4t.1 | 7s7a.1 | 7s84.1 | 7s85.1 | 7s9x.1 | 7sa0.1 | 8cur.1 | 8fow.1 | 8fp0.1 | 8fp5.1 | 8or0.1 | 8or4.1 | 8roz.1 | 8vq3.1 | 8vq4.1

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