SMTL ID : 5fp6.1

Structure of cyclin-dependent kinase 2 with small-molecule ligand 3-(4,7-dichloro-1H-indol-3-yl)prop-2-yn-1-ol (AT17833) in an alternate binding site.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x MFZ: 3-(4,7-dichloro-1H-indol-3-yl)prop-2-yn-1-ol(Non-covalent)

MFZ.1: 14 residues within 4Å: Chain A: I.10, G.11, E.12, G.13, V.18, A.31, K.33, V.64, F.80, E.81, F.82, L.83, L.134, D.145 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.18, A:V.18, A:A.31, A:F.80, A:L.134 Water bridges: A:I.10, A:G.13, A:K.33, A:D.86 Halogen bonds: A:L.83, A:D.145 MFZ.2: 10 residues within 4Å: Chain A: L.37, T.41, E.42, P.45, A.48, I.49, I.52, V.69, H.71, L.76 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.48, A:I.49, A:L.76, A:L.76 Hydrogen bonds: A:H.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ludlow, R.F. et al., Detection of Secondary Binding Sites in Proteins Using Fragment Screening. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-12-23

Peptides

CYCLIN-DEPENDENT KINASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYCLIN-DEPENDENT KINASE 2

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