SMTL ID : 5g05.1

Cryo-EM structure of combined apo phosphorylated APC

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.50 Å

Oligo State

hetero-1-1-2-1-1-2-2-1-2-1-1-1-1-1-2-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.23, C.26, H.56, C.59 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.23, B:C.26, B:H.56, B:C.59 ZN.2: 4 residues within 4Å: Chain B: C.51, H.53, C.73, C.76 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.53, B:C.73, B:C.76 ZN.3: 5 residues within 4Å: Chain B: C.34, D.36, C.37, C.44, H.58 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, S. et al., Molecular Mechanism of Apc/C Activation by Mitotic Phosphorylation. Nature (2016)

Release Date

2016-05-25

Peptides

ANAPHASE-PROMOTING COMPLEX SUBUNIT 1: A
ANAPHASE-PROMOTING COMPLEX SUBUNIT 11: B
CELL DIVISION CYCLE PROTEIN 23 HOMOLOG: CP
ANAPHASE-PROMOTING COMPLEX SUBUNIT 15: D
ANAPHASE-PROMOTING COMPLEX SUBUNIT 16: E
CELL DIVISION CYCLE PROTEIN 27 HOMOLOG: FH
ANAPHASE-PROMOTING COMPLEX SUBUNIT CDC26: GR
ANAPHASE-PROMOTING COMPLEX SUBUNIT 4: I
CELL DIVISION CYCLE PROTEIN 16 HOMOLOG: JK
ANAPHASE-PROMOTING COMPLEX SUBUNIT 10: L
ANAPHASE-PROMOTING COMPLEX SUBUNIT 13: M
ANAPHASE-PROMOTING COMPLEX SUBUNIT 2: N
ANAPHASE-PROMOTING COMPLEX SUBUNIT 5: O
UNIDENTIFIED PEPTIDE: Q
ANAPHASE-PROMOTING COMPLEX SUBUNIT 7: ST

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

P
P

D
D

E
E

F
F

H
H

G
G

R
W

I
I

J
J

K
K

L
L

M
M

N
N

O
O

Q
T

S
X

T
Y

ANAPHASE-PROMOTING COMPLEX SUBUNIT 1

ANAPHASE-PROMOTING COMPLEX SUBUNIT 11

CELL DIVISION CYCLE PROTEIN 23 HOMOLOG

ANAPHASE-PROMOTING COMPLEX SUBUNIT 15

ANAPHASE-PROMOTING COMPLEX SUBUNIT 16

CELL DIVISION CYCLE PROTEIN 27 HOMOLOG

ANAPHASE-PROMOTING COMPLEX SUBUNIT CDC26

ANAPHASE-PROMOTING COMPLEX SUBUNIT 4

CELL DIVISION CYCLE PROTEIN 16 HOMOLOG

ANAPHASE-PROMOTING COMPLEX SUBUNIT 10

ANAPHASE-PROMOTING COMPLEX SUBUNIT 13

ANAPHASE-PROMOTING COMPLEX SUBUNIT 2

ANAPHASE-PROMOTING COMPLEX SUBUNIT 5

UNIDENTIFIED PEPTIDE

ANAPHASE-PROMOTING COMPLEX SUBUNIT 7

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