SMTL ID : 5g44.1

Ligand complex of RORg LBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-1-1-mer

Ligands

1 x I6G: 8-methoxy-2,3-dimethylquinoxalin-5-ol(Non-covalent)

I6G.1: 11 residues within 4Å: Chain A: H.80, M.122, A.125, V.133, F.134, F.135, F.145, I.154, F.158 Ligands: SWX.2, YTZ.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.135, A:F.145, A:I.154, A:F.158 pi-Stacking: A:F.145

1 x SWX: (4-pyrimidin-5-ylphenyl)methanol(Non-covalent)

SWX.2: 9 residues within 4Å: Chain A: H.80, L.81, A.84, M.115, V.118, M.122, I.157 Ligands: I6G.1, YTZ.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.81 Water bridges: A:A.84

1 x YTZ: 4-amino-N-(1,3-thiazol-2-yl)benzenesulfonamide(Non-covalent)

YTZ.3: 12 residues within 4Å: Chain A: Q.43, L.44, L.49, A.84, V.118, R.121, M.122, R.124, A.125, F.134 Ligands: I6G.1, SWX.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.44, A:A.125 Hydrogen bonds: A:Q.43, A:L.44, A:R.124, A:F.134 Water bridges: A:R.121, A:R.121, A:R.121, A:R.121, A:E.136, A:E.136

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: C.123, Y.126, S.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.165 Water bridges: A:S.165

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 6 residues within 4Å: Chain A: T.82, Q.86, P.256, P.257, L.258 Chain B: I.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, Y. et al., Fragment Screening of Rorgammat Using Cocktail Crystallography: Identification of Simultaneous Binding of Multiple Fragments. Chemmedchem (2016)

Release Date

2016-08-03

Peptides

NUCLEAR RECEPTOR ROR-GAMMA: A
RORG: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

NUCLEAR RECEPTOR ROR-GAMMA

RORG

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