SMTL ID : 5h14.1 (1 other biounit)

EED in complex with an allosteric PRC2 inhibitor EED666

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: H.125, G.174, I.191, N.192, M.197, I.200 No protein-ligand interaction detected (PLIP)

1 x LQB: 2-[3-(3,5-dimethylpyrazol-1-yl)-4-nitro-phenyl]-3,4-dihydro-1H-isoquinoline(Non-covalent)

LQB.2: 8 residues within 4Å: Chain A: F.23, Y.74, N.120, L.166, D.236, Y.291, R.293, R.340 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.23, A:F.23, A:F.23, A:Y.291, A:Y.291, A:R.293 Hydrogen bonds: A:Y.291 pi-Stacking: A:F.23, A:Y.74, A:Y.291, A:Y.291 pi-Cation interactions: A:R.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, L. et al., Discovery and Molecular Basis of a Diverse Set of Polycomb Repressive Complex 2 Inhibitors Recognition by EED. PLoS ONE (2017)

Release Date

2017-01-25

Peptides

Polycomb protein EED: A
Histone-lysine N-methyltransferase EZH2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Polycomb protein EED

Histone-lysine N-methyltransferase EZH2

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