SMTL ID : 5u5k.1

Crystal structure of EED in complex with 3-(3-methoxybenzyl)piperidine hydrochloride

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

monomer

Ligands

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 4 residues within 4Å: Chain A: C.10, V.11, N.12, H.332 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.11

1 x 7VY: (3R)-3-[(3-methoxyphenyl)methyl]piperidine(Non-covalent)

7VY.2: 9 residues within 4Å: Chain A: F.23, Y.74, N.120, L.166, D.236, Y.291, M.292, R.293, R.340 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.23, A:Y.74, A:Y.74 Hydrogen bonds: A:R.293 Water bridges: A:N.120, A:N.120, A:E.164, A:Y.291 pi-Stacking: A:Y.291 pi-Cation interactions: A:R.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lingel, A. et al., Structure-Guided Design of EED Binders Allosterically Inhibiting the Epigenetic Polycomb Repressive Complex 2 (PRC2) Methyltransferase. J. Med. Chem. (2017)

Release Date

2017-01-11

Peptides

Polycomb protein EED: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polycomb protein EED

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