SMTL ID : 5u5t.2 (1 other biounit)

Crystal structure of EED in complex with H3K27Me3 peptide and 3-(benzo[d][1,3]dioxol-4-ylmethyl)piperidine-1-carboximidamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

2 x YT3: YTTRIUM (III) ION(Non-covalent)

YT3.1: 4 residues within 4Å: Chain A: R.195, K.219, H.221, F.222 No protein-ligand interaction detected (PLIP) YT3.2: 1 residues within 4Å: Chain A: R.195 No protein-ligand interaction detected (PLIP)

1 x 7W7: (3R)-3-[(2H-1,3-benzodioxol-4-yl)methyl]piperidine-1-carboximidamide(Non-covalent)

7W7.3: 10 residues within 4Å: Chain A: F.23, Y.74, N.120, E.164, L.166, D.236, Y.291, M.292, R.293, R.340 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.23, A:F.23, A:D.236, A:Y.291, A:Y.291, A:Y.291 Hydrogen bonds: A:N.120, A:N.120, A:R.293 Water bridges: A:E.164, A:E.164, A:E.164, A:Y.291, A:R.293 Salt bridges: A:E.164 pi-Cation interactions: A:Y.291, A:R.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lingel, A. et al., Structure-Guided Design of EED Binders Allosterically Inhibiting the Epigenetic Polycomb Repressive Complex 2 (PRC2) Methyltransferase. J. Med. Chem. (2017)

Release Date

2017-01-11

Peptides

Polycomb protein EED: A
Histone-lysine N-methyltransferase EZH2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Polycomb protein EED

Histone-lysine N-methyltransferase EZH2

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