SMTL ID : 5ttw.2 (1 other biounit)

Crystal Structure of EED in Complex with UNC4859

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x PRO- SER- M3L- PHE- NLW: UNC4859(Non-covalent)

PRO-SER-M3L-PHE-NLW.1: 15 residues within 4Å: Chain A: F.23, Y.74, N.233, Y.234, C.250, D.288, I.289, W.290, Y.291, Q.308, R.340, D.356 Ligands: UNX.10, UNX.12, UNX.13 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.23, A:Y.234, A:W.290, A:W.290, A:Q.308 Hydrogen bonds: A:W.290, A:R.340, A:R.340 pi-Cation interactions: A:F.23, A:Y.74, A:Y.291

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: L.151, I.154, F.215, I.216, S.217, K.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.217 Salt bridges: A:K.219

11 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 2 residues within 4Å: Chain A: H.53, S.54 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: Q.55 Ligands: UNX.5, UNX.6 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: S.54, Q.55 Ligands: UNX.4 No protein-ligand interaction detected (PLIP) UNX.6: 2 residues within 4Å: Chain A: Q.55 Ligands: UNX.4 No protein-ligand interaction detected (PLIP) UNX.7: 8 residues within 4Å: Chain A: R.293, L.305, G.306, I.339, R.340, Q.341, T.342 Ligands: UNX.11 No protein-ligand interaction detected (PLIP) UNX.8: 2 residues within 4Å: Chain A: H.332, H.333 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain A: S.285, Y.313 No protein-ligand interaction detected (PLIP) UNX.10: 5 residues within 4Å: Chain A: W.290 Ligands: PRO-SER-M3L-PHE-NLW.1, PRO-SER-M3L-PHE-NLW.1, UNX.12, UNX.13 No protein-ligand interaction detected (PLIP) UNX.11: 7 residues within 4Å: Chain A: M.292, R.293, L.305, G.306, I.339, R.340 Ligands: UNX.7 No protein-ligand interaction detected (PLIP) UNX.12: 3 residues within 4Å: Ligands: PRO-SER-M3L-PHE-NLW.1, UNX.10, UNX.13 No protein-ligand interaction detected (PLIP) UNX.13: 5 residues within 4Å: Ligands: PRO-SER-M3L-PHE-NLW.1, PRO-SER-M3L-PHE-NLW.1, PRO-SER-M3L-PHE-NLW.1, UNX.10, UNX.12 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barnash, K.D. et al., Discovery of Peptidomimetic Ligands of EED as Allosteric Inhibitors of PRC2. ACS Comb Sci (2017)

Release Date

2017-01-11

Peptides

Polycomb protein EED: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Polycomb protein EED

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