SMTL ID : 5hrv.1

Crystal structure of the fifth bromodomain of human PB1 in complex with 1-ethylisochromeno[3,4-c]pyrazol-5(2H)-one) compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 64C: 1-ethylisochromeno[3,4-c]pyrazol-5(3H)-one(Non-covalent)

64C.1: 14 residues within 4Å: Chain A: I.41, F.42, R.44, L.45, L.51, Y.54, M.62, D.63, M.89, N.92, A.93, Y.96, N.97, I.103 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.41, A:L.45, A:L.45, A:D.63 Hydrogen bonds: A:N.97, A:N.97 Water bridges: A:Y.54 pi-Stacking: A:F.42, A:Y.54

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: R.36, I.41, L.102, I.103, D.106 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.106 Water bridges: A:L.38, A:D.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Myrianthopoulos, V. et al., Discovery and Optimization of a Selective Ligand for the Switch/Sucrose Nonfermenting-Related Bromodomains of Polybromo Protein-1 by the Use of Virtual Screening and Hydration Analysis. J.Med.Chem. (2016)

Release Date

2016-10-12

Peptides

Protein polybromo-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein polybromo-1

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