SMTL ID : 5j7q.1

Macrophage Migration Inhibitory Factor bound to Inhibitor K664 Derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-trimer

Ligands

1 x 6H2: 4-(imidazo[1,2-a]pyridin-2-yl)benzene-1,2-diol(Non-covalent)

6H2.1: 9 residues within 4Å: Chain A: P.1, M.2, K.32, H.62, S.63, I.64, V.106 Chain C: Y.95, N.97 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:M.2, A:K.32, A:H.62, A:I.64, A:V.106, C:Y.95, C:Y.95 Hydrogen bonds: A:P.1, A:I.64

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.69, A:A.70, A:Q.71, A:Q.71 SO4.3: 6 residues within 4Å: Chain A: H.62, Y.99 Chain B: H.62, Y.99 Chain C: H.62, Y.99 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: A:Y.99 Water bridges: A:Y.99 Salt bridges: A:H.62, C:H.62, B:H.62 SO4.4: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.69, B:A.70, B:Q.71, B:Q.71 SO4.5: 2 residues within 4Å: Chain B: G.65, K.66 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.66 SO4.7: 4 residues within 4Å: Chain C: G.68, G.69, A.70, Q.71 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.68, C:G.69, C:A.70, C:Q.71, C:Q.71 SO4.8: 2 residues within 4Å: Chain C: G.65, K.66 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.66 SO4.9: 2 residues within 4Å: Chain C: A.70, R.73 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.73

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: Y.95, N.97 Chain B: P.1, M.2, H.62, S.63, I.64, V.106 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.97, A:N.97, B:P.1, B:I.64 GOL.11: 7 residues within 4Å: Chain B: Y.95, N.97 Chain C: P.1, M.2, H.62, I.64, V.106 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:P.1, C:I.64, B:N.97, B:N.97

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.10: 5 residues within 4Å: Chain C: D.16, G.17, F.18, L.19, S.20 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.19 Hydrogen bonds: C:G.17, C:G.17, C:L.19, C:S.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cisneros, J.A. et al., Irregularities in enzyme assays: The case of macrophage migration inhibitory factor. Bioorg.Med.Chem.Lett. (2016)

Release Date

2016-05-04

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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