SMTL ID : 5jz8.1

Aspartyl/Asparaginyl beta-hydroxylase (AspH)oxygenase and TPR domains in complex with manganese, N-oxalylglycine, and factor X substrate peptide fragment (39mer)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: H.350, H.396 Ligands: OGA.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.350, A:H.396, H2O.12

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 13 residues within 4Å: Chain A: W.296, S.339, M.341, H.350, R.359, H.361, F.390, H.396, V.398, R.406, I.408, I.410 Ligands: MN.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.339, A:H.361 Salt bridges: A:R.359, A:H.361, A:H.361, A:H.396, A:R.406

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: F.283, I.340, H.342 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.283 Water bridges: A:S.297 Salt bridges: A:H.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfeffer, I. et al., Aspartate/asparagine-beta-hydroxylase crystal structures reveal an unexpected epidermal growth factor-like domain substrate disulfide pattern. Nat Commun (2019)

Release Date

2017-05-24

Peptides

Aspartyl/asparaginyl beta-hydroxylase: A
Coagulation factor X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartyl/asparaginyl beta-hydroxylase

Coagulation factor X

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