SMTL ID : 6rk9.1 (1 other biounit)

Aspartyl/Asparaginyl beta-hydroxylase (AspH)oxygenase and TPR domains in complex with manganese, N-oxalylglycine and cyclic peptide substrate mimic of factor X

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.350, H.396 Chain B: D.3 Ligands: OGA.2 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.350, A:H.396, B:D.3, H2O.5

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 14 residues within 4Å: Chain A: W.296, S.339, M.341, H.350, R.359, H.361, F.390, H.396, V.398, R.406, I.408, I.410 Chain B: D.3 Ligands: MN.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.339, A:H.361 Water bridges: A:K.337, A:R.357, A:R.359 Salt bridges: A:R.359, A:H.361, A:H.361, A:H.396, A:R.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfeffer, I. et al., Aspartate/asparagine-beta-hydroxylase crystal structures reveal an unexpected epidermal growth factor-like domain substrate disulfide pattern. Nat Commun (2019)

Release Date

2019-05-08

Peptides

Aspartyl/asparaginyl beta-hydroxylase: A
ACA-LYS-ASP-GLY-LEU-GLY-GLU-TYR-THR-CYS-THR-SER-LEU-GLU-GLY-PHE-GLU: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Aspartyl/asparaginyl beta-hydroxylase

ACA-LYS-ASP-GLY-LEU-GLY-GLU-TYR-THR-CYS-THR-SER-LEU-GLU-GLY-PHE-GLU

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