SMTL ID : 5jza.1

Aspartyl/Asparaginyl beta-hydroxylase (AspH)oxygenase and TPR domains in complex with manganese and N-oxalylglycine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: H.350, H.396 Ligands: OGA.6 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.350, A:H.396, H2O.2, H2O.5

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: S.126, N.129, D.130, F.160, P.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.129, A:P.191 GOL.3: 3 residues within 4Å: Chain A: Y.215, W.231 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.231 GOL.4: 3 residues within 4Å: Chain A: W.231, N.377 Ligands: GOL.3 No protein-ligand interaction detected (PLIP) GOL.5: 5 residues within 4Å: Chain A: V.133, L.136, L.137, F.167, R.197 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.197 Water bridges: A:R.197

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.6: 14 residues within 4Å: Chain A: W.296, S.339, M.341, H.350, R.359, H.361, W.382, F.390, H.396, V.398, R.406, I.408, I.410 Ligands: MN.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.339, A:D.392 Water bridges: A:R.359, A:R.359, A:R.359, A:R.359 Salt bridges: A:R.359, A:H.361, A:H.361, A:H.396, A:R.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfeffer, I. et al., Aspartate/asparagine-beta-hydroxylase crystal structures reveal an unexpected epidermal growth factor-like domain substrate disulfide pattern. Nat Commun (2019)

Release Date

2017-05-24

Peptides

Aspartyl/asparaginyl beta-hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aspartyl/asparaginyl beta-hydroxylase

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