SMTL ID : 7bmj.2 (1 other biounit)

Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with manganese, 5-fluoropyridine-2,4-dicarboxylic acid, and factor X substrate peptide fragment (39mer-4Ser)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.350, R.359, H.396 Ligands: U4Q.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.350, A:H.396, H2O.2, H2O.4

1 x U4Q: 5-fluoranylpyridine-2,4-dicarboxylic acid(Non-covalent)

U4Q.2: 16 residues within 4Å: Chain A: W.296, S.339, M.341, V.347, H.350, R.359, H.361, W.382, F.390, D.392, H.396, V.398, R.406, I.408, I.410 Ligands: MN.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.296, A:V.398 Hydrogen bonds: A:W.296, A:S.339 Water bridges: A:R.357, A:R.359, A:R.359, A:R.359, A:R.359 Salt bridges: A:R.359, A:H.361, A:H.361, A:H.396, A:R.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brewitz, L. et al., Fluorinated derivatives of pyridine-2,4-dicarboxylate are potent inhibitors of human 2-oxoglutarate dependent oxygenases. J Fluor Chem (2021)

Release Date

2021-06-02

Peptides

Aspartyl/asparaginyl beta-hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Aspartyl/asparaginyl beta-hydroxylase

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