- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 51 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x K: POTASSIUM ION(Non-covalent)
K.17: 4 residues within 4Å:- Chain G: T.14, Y.125, N.128, M.131
5 PLIP interactions:4 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:T.14, G:Y.125, G:N.128, G:M.131, H2O.32
K.36: 4 residues within 4Å:- Chain L: A.183, D.186, V.187, T.189
4 PLIP interactions:3 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: L:A.183, L:D.186, L:T.189, H2O.60
K.45: 4 residues within 4Å:- Chain N: R.19, M.164, D.167, S.170
5 PLIP interactions:3 interactions with chain N, 2 Ligand-Water interactions- Metal complexes: N:M.164, N:D.167, N:S.170, H2O.71, H2O.74
K.60: 4 residues within 4Å:- Chain U: T.14, Y.125, N.128, M.131
5 PLIP interactions:4 interactions with chain U, 1 Ligand-Water interactions- Metal complexes: U:T.14, U:Y.125, U:N.128, U:M.131, H2O.102
K.74: 4 residues within 4Å:- Chain Z: A.183, D.186, V.187, T.189
4 PLIP interactions:3 interactions with chain Z, 1 Ligand-Water interactions- Metal complexes: Z:A.183, Z:D.186, Z:T.189, H2O.126
K.81: 4 residues within 4Å:- Chain 1: R.19, M.164, D.167, S.170
5 PLIP interactions:3 interactions with chain 1, 2 Ligand-Water interactions- Metal complexes: 1:M.164, 1:D.167, 1:S.170, H2O.139, H2O.141
- 10 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.18: 3 residues within 4Å:- Chain H: Q.91
- Chain N: D.51, D.93
No protein-ligand interaction detected (PLIP)MG.19: 6 residues within 4Å:- Chain H: R.19, I.163, D.166, L.167, S.169
- Chain Z: D.213
5 PLIP interactions:3 interactions with chain H, 1 interactions with chain Z, 1 Ligand-Water interactions- Metal complexes: H:I.163, H:D.166, H:S.169, Z:D.213, H2O.41
MG.24: 3 residues within 4Å:- Chain I: V.175, D.178, S.181
5 PLIP interactions:3 interactions with chain I, 2 Ligand-Water interactions- Metal complexes: I:V.175, I:D.178, I:S.181, H2O.44, H2O.45
MG.28: 6 residues within 4Å:- Chain I: D.205
- Chain Y: R.19, T.164, D.167, A.168, S.170
5 PLIP interactions:3 interactions with chain Y, 1 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: Y:T.164, Y:D.167, Y:S.170, I:D.205, H2O.122
MG.29: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.30: 6 residues within 4Å:- Chain K: R.19, T.164, D.167, A.168, S.170
- Chain W: D.205
5 PLIP interactions:3 interactions with chain K, 1 interactions with chain W, 1 Ligand-Water interactions- Metal complexes: K:T.164, K:D.167, K:S.170, W:D.205, H2O.57
MG.37: 6 residues within 4Å:- Chain L: D.213
- Chain V: R.19, I.163, D.166, L.167, S.169
5 PLIP interactions:3 interactions with chain V, 1 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: V:I.163, V:D.166, V:S.169, L:D.213, H2O.107
MG.61: 3 residues within 4Å:- Chain 1: D.51, D.93
- Chain V: Q.91
No protein-ligand interaction detected (PLIP)MG.64: 3 residues within 4Å:- Chain W: V.175, D.178, S.181
5 PLIP interactions:3 interactions with chain W, 2 Ligand-Water interactions- Metal complexes: W:V.175, W:D.178, W:S.181, H2O.111, H2O.112
MG.67: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 9 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.21: 6 residues within 4Å:- Chain G: Y.103
- Chain H: F.88, R.89, Q.91
- Chain N: Y.90, L.94
2 PLIP interactions:1 interactions with chain G, 1 interactions with chain H- Hydrogen bonds: G:Y.103, H:R.89
1PE.22: 8 residues within 4Å:- Chain 0: Y.141, Y.144
- Chain H: S.129, L.132
- Chain N: T.22, Y.25
- Chain Z: F.33
- Ligands: BO2.23
2 PLIP interactions:2 interactions with chain H- Water bridges: H:S.129, H:S.129
1PE.26: 6 residues within 4Å:- Chain I: R.66, E.97, K.98, Y.103
- Chain J: D.90
- Ligands: 1PE.27
3 PLIP interactions:3 interactions with chain I- Hydrogen bonds: I:K.98
- Water bridges: I:R.70, I:Y.103
1PE.27: 7 residues within 4Å:- Chain H: L.58, M.86, Y.90
- Chain I: Y.96, E.97, R.99
- Ligands: 1PE.26
1 PLIP interactions:1 interactions with chain I- Water bridges: I:Y.96
1PE.35: 4 residues within 4Å:- Chain K: F.54, Y.90
- Chain L: S.98, F.101
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.98
1PE.42: 6 residues within 4Å:- Chain 1: T.22
- Chain L: F.33
- Chain M: Y.141, Y.144
- Chain V: S.129
- Ligands: BO2.63
1 PLIP interactions:1 interactions with chain V- Water bridges: V:S.129
1PE.66: 5 residues within 4Å:- Chain W: R.66, E.97, K.98, Y.103
- Chain X: D.90
5 PLIP interactions:4 interactions with chain W, 1 interactions with chain X- Hydrogen bonds: W:K.98, W:Y.103, X:D.90
- Water bridges: W:R.70, W:G.101
1PE.73: 8 residues within 4Å:- Chain R: N.98, T.102
- Chain Y: F.54, L.58, Y.90
- Chain Z: Y.97, S.98, F.101
2 PLIP interactions:2 interactions with chain R- Water bridges: R:T.102, R:T.102
1PE.80: 7 residues within 4Å:- Chain 1: Y.61, Y.90, L.94
- Chain U: Y.103
- Chain V: F.88, R.89, Q.91
3 PLIP interactions:2 interactions with chain V, 1 interactions with chain 1- Hydrogen bonds: V:R.89, V:Q.91
- Water bridges: 1:A.58
- 6 x BO2: N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE(Covalent)
BO2.23: 13 residues within 4Å:- Chain H: T.1, A.20, T.21, E.22, C.31, A.46, G.47, T.48, A.49, T.52, G.168
- Chain I: D.125
- Ligands: 1PE.22
11 PLIP interactions:10 interactions with chain H, 1 interactions with chain I- Hydrophobic interactions: H:A.20, H:A.49
- Hydrogen bonds: H:T.1, H:T.21, H:T.21, H:G.47, H:G.47, H:G.47, H:A.49, I:D.125
- Water bridges: H:A.50
BO2.34: 13 residues within 4Å:- Chain K: T.1, R.19, A.20, T.21, A.22, K.33, M.45, A.46, G.47, G.48, A.49, Y.169
- Chain L: D.125
14 PLIP interactions:13 interactions with chain K, 1 interactions with chain L- Hydrophobic interactions: K:A.20, K:M.45, K:A.49, K:Y.169
- Hydrogen bonds: K:T.1, K:T.21, K:T.21, K:G.47, K:G.47, K:G.47, K:A.49, L:D.125
- Water bridges: K:A.50, K:S.130
BO2.46: 17 residues within 4Å:- Chain H: Y.114, S.118
- Chain N: T.1, R.19, T.20, T.21, T.22, K.33, R.45, S.46, G.47, S.48, A.49, T.52, M.95, S.169
- Ligands: CL.43
11 PLIP interactions:2 interactions with chain H, 9 interactions with chain N- Hydrogen bonds: H:S.118, N:T.1, N:T.21, N:T.21, N:G.47, N:G.47, N:G.47, N:A.49
- pi-Stacking: H:Y.114
- Hydrophobic interactions: N:A.49
- Water bridges: N:A.50
BO2.63: 12 residues within 4Å:- Chain V: T.1, A.20, T.21, E.22, K.33, A.46, G.47, T.48, A.49, T.52
- Chain W: D.125
- Ligands: 1PE.42
8 PLIP interactions:8 interactions with chain V- Hydrophobic interactions: V:A.20
- Hydrogen bonds: V:T.1, V:T.21, V:T.21, V:G.47, V:G.47, V:G.47, V:A.49
BO2.72: 13 residues within 4Å:- Chain Y: T.1, R.19, A.20, T.21, A.22, K.33, M.45, A.46, G.47, G.48, A.49, Y.169
- Chain Z: D.125
13 PLIP interactions:13 interactions with chain Y- Hydrophobic interactions: Y:A.20, Y:M.45, Y:A.49, Y:Y.169
- Hydrogen bonds: Y:T.1, Y:T.21, Y:T.21, Y:G.47, Y:G.47, Y:G.47, Y:A.49
- Water bridges: Y:A.50, Y:S.130
BO2.82: 16 residues within 4Å:- Chain 1: T.1, R.19, T.20, T.21, T.22, K.33, R.45, S.46, G.47, S.48, A.49, T.52, M.95, S.169
- Chain V: Y.114, S.118
11 PLIP interactions:9 interactions with chain 1, 2 interactions with chain V- Hydrophobic interactions: 1:A.49
- Hydrogen bonds: 1:T.1, 1:T.21, 1:T.21, 1:G.47, 1:G.47, 1:G.47, 1:A.49, V:S.118
- Water bridges: 1:A.50
- pi-Stacking: V:Y.114
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schrader, J. et al., The inhibition mechanism of human 20S proteasomes enables next-generation inhibitor design. Science (2016)
- Release Date
- 2016-08-17
- Peptides
- Proteasome subunit alpha type-2: AO
Proteasome subunit alpha type-4: BP
Proteasome subunit alpha type-7: CQ
Proteasome subunit alpha type-5: DR
Proteasome subunit alpha type-1: ES
Proteasome subunit alpha type-3: FT
Proteasome subunit alpha type-6: GU
Proteasome subunit beta type-7: HV
Proteasome subunit beta type-3: IW
Proteasome subunit beta type-2: JX
Proteasome subunit beta type-5: KY
Proteasome subunit beta type-1: LZ
Proteasome subunit beta type-4: M0
Proteasome subunit beta type-6: N1 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AO
OB
BP
PC
CQ
QD
DR
RE
ES
SF
FT
TG
GU
UH
HV
VI
IW
WJ
JX
XK
KY
YL
LZ
ZM
M0
aN
N1
b
SMTL ID : 5lf3.1
Human 20S proteasome complex with Bortezomib at 2.1 Angstrom
Proteasome subunit alpha type-2
Toggle Identical (AO)Proteasome subunit alpha type-4
Toggle Identical (BP)Proteasome subunit alpha type-7
Proteasome subunit alpha type-5
Toggle Identical (DR)Proteasome subunit alpha type-1
Proteasome subunit alpha type-3
Proteasome subunit alpha type-6
Proteasome subunit beta type-7
Toggle Identical (HV)Proteasome subunit beta type-3
Toggle Identical (IW)Proteasome subunit beta type-2
Toggle Identical (JX)Proteasome subunit beta type-5
Proteasome subunit beta type-1
Toggle Identical (LZ)Proteasome subunit beta type-4
Toggle Identical (M0)Proteasome subunit beta type-6
Related Entries With Identical Sequence
1iru.1 | 3unb.1 | 3unb.2 | 3une.1 | 3une.2 | 3unf.1 | 3unh.1 | 4r3o.1 | 4r67.1 | 4r67.2 | 5a0q.1 | 5dsv.1 | 5gjq.1 | 5l4g.1 | 5le5.1 | 5lex.1 | 5ley.1 | 5lez.1 | 5lf0.1 | 5lf1.1 | 5lf4.1 | 5lf6.1 | 5lf7.1 | 5ln3.1 | 5m32.1 | 5t0g.1 | 5t0h.1 | 5t0i.1 | 5t0j.1 | 5vfo.1 more...less...5vfp.1 | 5vfq.1 | 5vfr.1 | 5vfs.1 | 5vft.1 | 5vfu.1 | 6avo.1 | 6e5b.1 | 6epc.1 | 6epd.1 | 6epe.1 | 6epf.1 | 6kwy.1 | 6msb.1 | 6msd.1 | 6mse.1 | 6msg.1 | 6msh.1 | 6msj.1 | 6msk.1 | 6r70.1 | 6rey.1 | 6rgq.1 | 6tu3.1 | 6wjd.1 | 6wjn.1 | 6xmj.1 | 7awe.1 | 7b12.1 | 7dr6.1 | 7dr7.1 | 7drw.1 | 7e55.1 | 7e55.2 | 7e55.3 | 7lxv.1 | 7nan.1 | 7nao.1 | 7nap.1 | 7naq.1 | 7nht.1 | 7pg9.1 | 7qxn.1 | 7qxp.1 | 7qxu.1 | 7qxw.1 | 7qxx.1 | 7qy7.1 | 7qya.1 | 7qyb.1 | 7v5g.1 | 7v5m.1 | 7w37.1 | 7w38.1 | 7w39.1 | 7w3a.1 | 7w3b.1 | 7w3c.1 | 7w3f.1 | 7w3g.1 | 7w3h.1 | 7w3i.1 | 7w3j.1 | 7w3k.1 | 7w3m.1 | 8azk.1 | 8bzl.1 | 8cvr.1 | 8cvs.1 | 8cvt.1 | 8cxb.1 | 8fz5.1 | 8fz6.1 | 8qyj.1 | 8qyl.1 | 8qym.1 | 8qyn.1 | 8qyo.1 | 8qys.1 | 8qz9.1 | 8tm3.1 | 8tm4.1 | 8tm5.1 | 8tm6.1 | 8ud9.1 | 8usb.1 | 8usc.1 | 8ypk.1 | 8ysx.1 | 8yvg.1 | 8yvp.1