SMTL ID : 5mfe.2 (3 other biounits)

Designed armadillo repeat protein YIIIM5AII in complex with (RR)4 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: L.105, S.141, P.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.141 EDO.2: 3 residues within 4Å: Chain A: E.247, Q.250, E.254 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.254

9 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: P.58, E.60 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:P.58, A:E.60 CA.4: 2 residues within 4Å: Chain A: P.100, E.102 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:P.100, A:E.102 CA.5: 2 residues within 4Å: Chain A: P.142, E.144 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:P.142, A:E.144, H2O.4 CA.6: 2 residues within 4Å: Chain A: P.184, E.186 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:P.184, A:E.186, H2O.1 CA.7: 2 residues within 4Å: Chain A: P.226, E.228 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:P.226, A:E.228, A:E.228, H2O.4 CA.8: 1 residues within 4Å: Chain A: S.285 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.285 CA.9: 2 residues within 4Å: Chain A: Q.11, N.14 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:Q.11 CA.10: 2 residues within 4Å: Chain A: E.281, Q.284 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.281 CA.11: 2 residues within 4Å: Chain A: P.16, Q.18 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:P.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansen, S. et al., Curvature of designed armadillo repeat proteins allows modular peptide binding. J. Struct. Biol. (2018)

Release Date

2017-09-13

Peptides

YIIIM5AII: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

YIIIM5AII

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