SMTL ID : 5mfe.3 (3 other biounits)

Designed armadillo repeat protein YIIIM5AII in complex with (RR)4 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: L.105, S.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.141 EDO.2: 3 residues within 4Å: Chain A: N.120, S.159, G.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.120, A:N.120 EDO.3: 3 residues within 4Å: Chain A: S.239, E.275, E.278 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.239, A:E.278, A:K.282, A:K.282 EDO.4: 5 residues within 4Å: Chain A: A.74, S.75, G.76, N.114, S.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.76, A:N.114, A:S.117 EDO.5: 2 residues within 4Å: Chain A: S.183, I.230 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.183, A:E.186, A:E.186

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 2 residues within 4Å: Chain A: Q.11, N.14 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Q.11, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansen, S. et al., Curvature of designed armadillo repeat proteins allows modular peptide binding. J. Struct. Biol. (2018)

Release Date

2017-09-13

Peptides

YIIIM5AII: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

YIIIM5AII

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