SMTL ID : 5mfg.1

Designed armadillo repeat protein YIIIM5AII in complex with peptide (RR)4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-4-1-mer

Ligands

13 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: N.14, Q.53 No protein-ligand interaction detected (PLIP) CA.2: 6 residues within 4Å: Chain A: P.142, N.143, E.144 Chain C: P.100, N.101, E.102 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: A:P.142, A:E.144, C:P.100, H2O.1, H2O.9 CA.3: 6 residues within 4Å: Chain A: P.184, N.185, E.186 Chain C: P.58, N.59, E.60 5 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:P.58, C:E.60, A:P.184, H2O.1, H2O.9 CA.4: 6 residues within 4Å: Chain A: P.100, N.101, E.102 Chain C: P.142, N.143, E.144 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: A:P.100, A:E.102, C:P.142, H2O.1, H2O.9 CA.5: 6 residues within 4Å: Chain A: P.58, N.59, E.60 Chain C: P.184, N.185, E.186 5 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: C:P.184, C:E.186, A:P.58, A:E.60, H2O.2 CA.6: 6 residues within 4Å: Chain A: P.16, D.17, Q.18 Chain C: P.226, N.227, E.228 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Metal complexes: C:P.226, C:E.228, C:E.228, A:P.16 CA.7: 6 residues within 4Å: Chain A: P.226, N.227, E.228 Chain D: P.226, N.227, E.228 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D Metal complexes: A:P.226, A:E.228, D:P.226, D:E.228 CA.8: 6 residues within 4Å: Chain B: P.184, N.185, E.186 Chain D: P.58, N.59, E.60 5 PLIP interactions: 2 interactions with chain D, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: D:P.58, D:E.60, B:P.184, B:E.186, H2O.14 CA.9: 6 residues within 4Å: Chain B: P.100, N.101, E.102 Chain D: P.142, N.143, E.144 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: B:P.100, D:P.142, D:E.144, H2O.14, H2O.17 CA.10: 6 residues within 4Å: Chain B: P.58, N.59, E.60 Chain D: P.184, N.185, E.186 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: B:P.58, B:E.60, D:P.184, H2O.5, H2O.14 CA.11: 6 residues within 4Å: Chain B: P.226, N.227, E.228 Chain D: P.16, D.17, Q.18 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B Metal complexes: D:P.16, B:P.226, B:E.228 CA.12: 6 residues within 4Å: Chain B: P.142, N.143, E.144 Chain D: P.100, N.101, E.102 5 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: D:P.100, B:P.142, H2O.6, H2O.15, H2O.17 CA.13: 3 residues within 4Å: Chain D: S.117, I.123, S.159 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:S.159, H2O.14, H2O.15, H2O.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansen, S. et al., Curvature of designed armadillo repeat proteins allows modular peptide binding. J. Struct. Biol. (2018)

Release Date

2017-09-13

Peptides

YIIIM5AII: ABCD
(RR)4: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

YIIIM5AII

(RR)4

Related Entries With Identical Sequence