SMTL ID : 5mff.1 (1 other biounit)

Designed armadillo repeat protein YIIIM5AII in complex with peptide (RR)5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-1-mer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: G.245, N.246 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.246 Water bridges: A:G.245 EDO.2: 3 residues within 4Å: Chain A: Q.263, S.266, H.267 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.268 EDO.3: 7 residues within 4Å: Chain A: E.228, Q.232, N.269 Chain B: N.120, S.159, G.160, G.161 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.120, B:N.120, A:E.228, A:N.269 EDO.4: 6 residues within 4Å: Chain A: G.34, G.35 Chain B: P.184, N.185, E.186, Q.187 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:P.184, B:E.186, B:Q.187, B:Q.187 Water bridges: B:E.186 EDO.5: 3 residues within 4Å: Chain B: G.172, L.174, P.175 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.172 EDO.6: 3 residues within 4Å: Chain B: Q.190 Chain C: R.7, R.9 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.7, C:R.9, C:R.9 Water bridges: C:R.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansen, S. et al., Curvature of designed armadillo repeat proteins allows modular peptide binding. J. Struct. Biol. (2018)

Release Date

2017-09-13

Peptides

YIIIM5AII: AB
(RR)5: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

YIIIM5AII

(RR)5

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