SMTL ID : 5mff.2 (1 other biounit)

Designed armadillo repeat protein YIIIM5AII in complex with peptide (RR)5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-1-mer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: I.211, D.212, G.214 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.212, A:G.214 EDO.2: 6 residues within 4Å: Chain A: W.152, S.155, N.156, S.159, W.194, N.198 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Water bridges: C:R.8 Hydrogen bonds: A:N.198 EDO.3: 3 residues within 4Å: Chain A: G.77, N.78, E.79 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:E.186 Hydrogen bonds: A:N.78, A:E.79 EDO.4: 6 residues within 4Å: Chain A: G.161, N.162, E.163, Q.164 Chain B: E.268, E.270 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:E.268, B:E.270, A:E.163, A:Q.164, A:Q.164 Water bridges: A:N.162 EDO.5: 7 residues within 4Å: Chain A: G.34, G.35, N.36 Chain B: P.142, N.143, E.144, Q.145 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.142, B:E.144, B:E.144, B:Q.145, A:G.34 EDO.6: 1 residues within 4Å: Chain B: D.86 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.86 EDO.7: 2 residues within 4Å: Chain B: Q.190 Chain C: R.8 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:R.8, B:Q.190 Water bridges: C:R.8 EDO.8: 2 residues within 4Å: Chain B: S.117 Chain C: R.7 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:R.7, B:S.117 Water bridges: C:R.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansen, S. et al., Curvature of designed armadillo repeat proteins allows modular peptide binding. J. Struct. Biol. (2018)

Release Date

2017-09-13

Peptides

YIIIM5AII: AB
(RR)5: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
F

YIIIM5AII

(RR)5

Related Entries With Identical Sequence