SMTL ID : 5ncp.1

ENAH EVH1 in complex with Ac-[2-Cl-F]-[ProM-2]-[ProM-12]-OH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x EG5: (3~{S},7~{R},10~{R},13~{R})-4-[(3~{S},6~{R},8~{a}~{S})-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid(Non-covalent)

EG5.1: 12 residues within 4Å: Chain A: Y.18, W.25, K.71, N.73, A.75, T.76, F.79, Q.81, W.82, R.83, V.88, N.92 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.18, A:Y.18, A:W.25, A:K.71, A:N.73, A:F.79, A:F.79, A:F.79, A:R.83 Hydrogen bonds: A:W.25, A:Q.81, A:R.83 Water bridges: A:N.73, A:N.73

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 6 residues within 4Å: Chain A: Q.10, A.11, R.12, R.36, I.55, D.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.12, A:R.12, A:R.36, A:R.36, A:D.98 NO3.3: 2 residues within 4Å: Chain A: R.49, A.65 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.49, A:R.49 Water bridges: A:A.65, A:A.65

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.36, H.38, R.53 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.38, A:R.53 Salt bridges: A:R.36, A:H.38, A:R.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barone, M. et al., Designed nanomolar small-molecule inhibitors of Ena/VASP EVH1 interaction impair invasion and extravasation of breast cancer cells. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2018-03-28

Peptides

Protein enabled homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein enabled homolog

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