SMTL ID : 5neg.1

ENAH EVH1 in complex with Ac-[2-Cl-F]-[ProM-2]-[ProM-13]-OEt

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

homo-dimer

Ligands

2 x 8VK: ethyl (3~{S},7~{R},10~{R},11~{R},13~{S})-4-[(3~{S},6~{R},8~{a}~{S})-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-11-ethyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylate(Non-covalent)

8VK.1: 13 residues within 4Å: Chain A: M.16, Y.18, W.25, K.71, N.73, A.75, T.76, F.79, Q.81, W.82, R.83, V.88, N.92 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.18, A:Y.18, A:W.25, A:K.71, A:N.73, A:F.79, A:F.79, A:F.79 Hydrogen bonds: A:W.25, A:Q.81, A:R.83 8VK.6: 13 residues within 4Å: Chain B: M.16, Y.18, W.25, K.71, N.73, A.75, T.76, F.79, Q.81, W.82, R.83, V.88, N.92 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Y.18, B:Y.18, B:W.25, B:K.71, B:N.73, B:T.76, B:F.79, B:F.79, B:F.79, B:F.79 Hydrogen bonds: B:W.25, B:Q.81, B:R.83 Water bridges: B:N.73

7 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 6 residues within 4Å: Chain A: Q.10, A.11, R.12, R.36, I.55, D.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.12, A:R.12, A:R.36, A:R.36, A:D.98 NO3.3: 2 residues within 4Å: Chain A: T.76, Q.77 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.77, A:Q.77 Water bridges: A:T.76, A:T.78 NO3.4: 3 residues within 4Å: Chain A: R.36, H.38, R.53 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.36, A:H.38, A:R.53 Water bridges: A:H.58 NO3.5: 2 residues within 4Å: Chain A: R.49, A.65 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.49, A:R.49 Water bridges: A:A.65, A:A.65 NO3.7: 6 residues within 4Å: Chain B: Q.10, A.11, R.12, R.36, I.55, D.98 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.12, B:R.12, B:R.36, B:R.36, B:D.98 NO3.8: 2 residues within 4Å: Chain B: T.76, Q.77 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.77 NO3.9: 2 residues within 4Å: Chain B: R.49, A.65 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.49, B:R.49 Water bridges: B:A.65

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 3 residues within 4Å: Chain B: R.36, H.38, R.53 7 PLIP interactions: 7 interactions with chain B Water bridges: B:R.36, B:H.38, B:H.38, B:R.53 Salt bridges: B:R.36, B:H.38, B:R.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barone, M. et al., Designed nanomolar small-molecule inhibitors of Ena/VASP EVH1 interaction impair invasion and extravasation of breast cancer cells. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2018-03-21

Peptides

Protein enabled homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein enabled homolog

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