SMTL ID : 5o8n.1

Structure of thermolysin at room temperature via a method of acoustically induced rotation.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, E.190 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.177, A:E.177, A:D.185, A:E.190, A:E.190 CA.2: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.59, A:Q.61, H2O.1, H2O.2, H2O.3 CA.12: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.193, A:T.194, A:I.197, H2O.1, H2O.2 CA.13: 5 residues within 4Å: Chain A: E.177, N.183, D.185, E.190, D.191 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:N.183, A:E.190

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: H.142, H.146, Y.157, E.166 Ligands: CL.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.142, A:H.146, A:E.166, A:E.166

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 8 residues within 4Å: Chain A: H.142, E.143, H.146, Y.157, E.166, H.231 Ligands: ZN.3, CL.6 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: Y.66 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: Y.157 Ligands: CL.4 Ligand excluded by PLIP

5 x NA: SODIUM ION(Non-functional Binders)

NA.7: 2 residues within 4Å: Chain A: Y.242, Q.246 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.242, A:Q.246 Water bridges: A:W.186, A:Q.246 NA.8: 2 residues within 4Å: Chain A: N.19, Y.75 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.19, A:N.19, A:Y.75, A:Y.75 NA.9: 2 residues within 4Å: Chain A: N.21, R.35 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.21, A:R.35, A:R.35 Water bridges: A:T.34 NA.10: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.226 NA.11: 1 residues within 4Å: Chain A: S.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.298, A:S.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burton, C.G. et al., An acoustic on-chip goniometer for room temperature macromolecular crystallography. Lab Chip (2017)

Release Date

2017-08-09

Peptides

Thermolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermolysin

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