SMTL ID : 5oql.1

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-2-1-1-1-1-1-1-1-2-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain P: C.104, C.133, H.135, C.143 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:C.104, P:C.133, P:H.135, P:C.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, J. et al., 3.2- angstrom -resolution structure of the 90S preribosome before A1 pre-rRNA cleavage. Nat. Struct. Mol. Biol. (2017)

Release Date

2017-10-11

Peptides

Periodic tryptophan protein 2-like protein: A
Utp2: B
Utp3: C
Utp4: D
Utp6: E
Utp7: F
Utp10: G
U3 small nucleolar RNA-associated protein 11: H
Utp12: I
Utp13: J
Utp14: K
Utp15: L
Utp17: M
Utp18: N
Putative U3 snoRNP protein: O
Utp24: P
Utp30: Q
Nop1: RS
Putative nucleolar protein: T
Nop58: U
Snu13: VW
Rrp9: X
RNA 3'-terminal phosphate cyclase-like protein: Y
Bms1: Z
Imp3: 0
Putative U3 small nucleolar ribonucleoprotein: 1
Putative U3 small nucleolar ribonucleoprotein protein: 2
Sof1: 3
Emg1: 45
KRR1 small subunit processome component: 6
Pre-rRNA-processing protein PNO1: 7
RNA cytidine acetyltransferase: 89
Fcf2: a
40S ribosomal protein S1: b
40S ribosomal protein S4: c
40S ribosomal protein s5-like protein: d
40S ribosomal protein S6: e
40S ribosomal protein S7-like protein: f
40S ribosomal protein S8: g
40S ribosomal protein s9-like protein: h
40S ribosomal protein S13-like protein: i
40S ribosomal protein S14-like protein: j
40S ribosomal protein S16-like protein: k
40S ribosomal protein S11-like protein: l
40S ribosomal protein S22-like protein: m
40S ribosomal protein s23-like protein: n
40S ribosomal protein S24: o
40S ribosomal protein S28-like protein: p
Faf1: q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

4
e

5
f

6
g

7
h

8
i

9
j

a
k

b
l

c
m

d
n

e
o

f
p

g
q

h
r

i
s

j
t

k
u

l
v

m
w

n
x

o
y

p
z

q
0

Periodic tryptophan protein 2-like protein

Utp2

Utp3

Utp4

Utp6

Utp7

Utp10

U3 small nucleolar RNA-associated protein 11

Utp12

Utp13

Utp14

Utp15

Utp17

Utp18

Putative U3 snoRNP protein

Utp24

Utp30

Nop1

Putative nucleolar protein

Nop58

Snu13

Rrp9

RNA 3'-terminal phosphate cyclase-like protein

Bms1

Imp3

Putative U3 small nucleolar ribonucleoprotein

Putative U3 small nucleolar ribonucleoprotein protein

Sof1

Emg1

KRR1 small subunit processome component

Pre-rRNA-processing protein PNO1

RNA cytidine acetyltransferase

Fcf2

40S ribosomal protein S1

40S ribosomal protein S4

40S ribosomal protein s5-like protein

40S ribosomal protein S6

40S ribosomal protein S7-like protein

40S ribosomal protein S8

40S ribosomal protein s9-like protein

40S ribosomal protein S13-like protein

40S ribosomal protein S14-like protein

40S ribosomal protein S16-like protein

40S ribosomal protein S11-like protein

40S ribosomal protein S22-like protein

40S ribosomal protein s23-like protein

40S ribosomal protein S24

40S ribosomal protein S28-like protein

Faf1

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