SMTL ID : 8pv7.1

Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
3 x MG: MAGNESIUM ION(Non-covalent)
5 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Thoms, M. et al., Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep. (2023)
Release Date
2023-11-15
Peptides
Utp30: E
Large ribosomal subunit protein uL10: F
Nucleolar GTP-binding protein 1: G
Putative RNA-binding protein: H
Pescadillo homolog: I
Ribosome biogenesis protein NSA2 homolog: J
Putative GTP binding protein: K
60S ribosomal protein l7-like protein: L2
Eukaryotic translation initiation factor 6: M
DUF2423 domain-containing protein: N
Ribosome biogenesis protein RLP24: O
Putative 60S ribosomal protein: P
Zinc finger domain-containing protein: Q
Nucleolar GTP-binding protein 2: R
Ribosome biogenesis protein NOP53: S
Ribosome production factor 2 homolog: T
Ribosome biogenesis regulatory protein: U
Ribosome assembly protein 4: V
rRNA-processing protein: W
60S ribosomal protein L2-like protein: X
60S ribosomal protein L3-like protein: Y
60S ribosomal protein L4-like protein: Z
60S ribosomal protein l5-like protein: 0
60S ribosomal protein L6: 1
60S ribosomal protein L8: 3
60S ribosomal protein l9-like protein: 4
Putative ribosomal protein: 5
60S ribosomal protein L12-like protein: 6
60S ribosomal protein L13: 7
60S ribosomal protein L14-like protein: 8
Ribosomal protein L15: 9
60S ribosomal protein L16-like protein: a
60S ribosomal protein l17-like protein: b
Ribosomal protein L18-like protein: c
Ribosomal protein L19: d
60S ribosomal protein L20: e
60S ribosomal protein l21-like protein: f
60S ribosomal protein L22-like protein: g
60S ribosomal protein l23-like protein: h
60S ribosomal protein L25-like protein: i
60S ribosomal protein L26-like protein: j
60S ribosomal protein L27: k
60S ribosomal protein L28-like protein: l
60S ribosomal protein l30-like protein: m
Putative 60S ribosomal protein: n
60S ribosomal protein L32-like protein: o
60S ribosomal protein l33-like protein: p
Ribosomal protein l34-like protein: q
dolichyl-diphosphooligosaccharide--protein glycotransferase: r
60S ribosomal protein L36: s
Ribosomal protein L37: t
60S ribosomal protein L38-like protein: u
Ribosomal protein eL39: v
60S ribosomal protein L43-like protein: w
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
E
CB
F
CF
G
CH
H
CI
I
CJ
J
CK
K
CL
L
CM
2
LF
M
CN
N
CO
O
CQ
P
Lq
Q
Cb
R
Cd
S
Ce
T
Cf
U
Cg
V
Ch
W
Cz
X
LA
Y
LB
Z
LC
0
LD
1
LE
3
LG
4
LH
5
LJ
6
LK
7
LL
8
LM
9
LN
a
LO
b
LP
c
LQ
d
LR
e
LS
f
LT
g
LU
h
LV
i
LX
j
LY
k
LZ
l
La
m
Lc
n
Ld
o
Le
p
Lf
q
Lg
r
Lh
s
Li
t
Lj
u
Lk
v
Ll
w
Lp

Utp30

Large ribosomal subunit protein uL10

Nucleolar GTP-binding protein 1

Putative RNA-binding protein

Pescadillo homolog

Ribosome biogenesis protein NSA2 homolog

Putative GTP binding protein

60S ribosomal protein l7-like protein

Eukaryotic translation initiation factor 6

DUF2423 domain-containing protein

Ribosome biogenesis protein RLP24

Putative 60S ribosomal protein

Zinc finger domain-containing protein

Nucleolar GTP-binding protein 2

Ribosome biogenesis protein NOP53

Ribosome production factor 2 homolog

Ribosome biogenesis regulatory protein

Ribosome assembly protein 4

rRNA-processing protein

60S ribosomal protein L2-like protein

60S ribosomal protein L3-like protein

60S ribosomal protein L4-like protein

60S ribosomal protein l5-like protein

60S ribosomal protein L6

60S ribosomal protein L8

60S ribosomal protein l9-like protein

Putative ribosomal protein

60S ribosomal protein L12-like protein

60S ribosomal protein L13

60S ribosomal protein L14-like protein

Ribosomal protein L15

60S ribosomal protein L16-like protein

60S ribosomal protein l17-like protein

Ribosomal protein L18-like protein

Ribosomal protein L19

60S ribosomal protein L20

60S ribosomal protein l21-like protein

60S ribosomal protein L22-like protein

60S ribosomal protein l23-like protein

60S ribosomal protein L25-like protein

60S ribosomal protein L26-like protein

60S ribosomal protein L27

60S ribosomal protein L28-like protein

60S ribosomal protein l30-like protein

Putative 60S ribosomal protein

60S ribosomal protein L32-like protein

60S ribosomal protein l33-like protein

Ribosomal protein l34-like protein

dolichyl-diphosphooligosaccharide--protein glycotransferase

60S ribosomal protein L36

Ribosomal protein L37

60S ribosomal protein L38-like protein

Ribosomal protein eL39

60S ribosomal protein L43-like protein

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