SMTL ID : 8i9x.1

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
2 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Lau, B. et al., Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep. (2023)
Release Date
2023-05-17
Peptides
Brix domain-containing protein: C
Ribosome biogenesis protein C8F11.04: D
Ribosome biogenesis protein ERB1: E
Ribosome biogenesis protein YTM1: F
RNA helicase: G
Ribosome assembly factor mrt4: H
60S ribosome subunit biogenesis protein NIP7: I
Nucleolar GTP-binding protein 1: J
Putative RNA-binding protein: K
Pescadillo homolog: L
Ribosome biogenesis protein NSA2 homolog: M
Putative GTP binding protein: N
60S ribosomal protein l7-like protein: O5
Eukaryotic translation initiation factor 6: P
DUF2423 domain-containing protein: Q
RNA methyltransferase nop2-like protein: R
Ribosome biogenesis protein RLP24: S
Nucleolar protein 16: T
AdoMet-dependent rRNA methyltransferase SPB1: U
Nucleolar complex-associated protein 3: V
rRNA-processing protein EBP2: W
Putative 60S ribosomal protein: X
60S ribosomal subunit-like protein: Y
Putative NOC2 family protein: Z
ATP-dependent RNA helicase DBP10: 0
rRNA-processing protein: 1
60S ribosomal protein L3-like protein: 2
60S ribosomal protein L4-like protein: 3
60S ribosomal protein L6: 4
60S ribosomal protein L8: 6
60S ribosomal protein l9-like protein: 7
60S ribosomal protein L12-like protein: 8
60S ribosomal protein L13: 9
60S ribosomal protein L14-like protein: a
Ribosomal protein L15: b
60S ribosomal protein L16-like protein: c
60S ribosomal protein l17-like protein: d
Ribosomal protein L18-like protein: e
Ribosomal protein L19: f
60S ribosomal protein L20: g
60S ribosomal protein l21-like protein: h
60S ribosomal protein L22-like protein: i
60S ribosomal protein l23-like protein: j
60S ribosomal protein L25-like protein: k
60S ribosomal protein L26-like protein: l
60S ribosomal protein L27: m
60S ribosomal protein l30-like protein: n
Putative 60S ribosomal protein: o
60S ribosomal protein L32-like protein: p
60S ribosomal protein l33-like protein: q
Ribosomal protein l34-like protein: r
dolichyl-diphosphooligosaccharide--protein glycotransferase: s
60S ribosomal protein L36: t
Ribosomal protein L37: u
60S ribosomal protein L38-like protein: v
60S ribosomal protein L39: w
Ribosomal protein: x
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
C
CA
D
CB
E
CC
F
CD
G
CE
H
CF
I
CG
J
CH
K
CI
L
CJ
M
CK
N
CL
O
CM
5
LF
P
CN
Q
CO
R
CP
S
CQ
T
CR
U
CS
V
CT
W
CU
X
CV
Y
CX
Z
CY
0
Cb
1
Cz
2
LB
3
LC
4
LE
6
LG
7
LH
8
LK
9
LL
a
LM
b
LN
c
LO
d
LP
e
LQ
f
LR
g
LS
h
LT
i
LU
j
LV
k
LX
l
LY
m
LZ
n
Lc
o
Ld
p
Le
q
Lf
r
Lg
s
Lh
t
Li
u
Lj
v
Lk
w
Ll
x
Lq

Brix domain-containing protein

Ribosome biogenesis protein C8F11.04

Ribosome biogenesis protein ERB1

Ribosome biogenesis protein YTM1

RNA helicase

Ribosome assembly factor mrt4

60S ribosome subunit biogenesis protein NIP7

Nucleolar GTP-binding protein 1

Putative RNA-binding protein

Pescadillo homolog

Ribosome biogenesis protein NSA2 homolog

Putative GTP binding protein

60S ribosomal protein l7-like protein

Eukaryotic translation initiation factor 6

DUF2423 domain-containing protein

RNA methyltransferase nop2-like protein

Ribosome biogenesis protein RLP24

Nucleolar protein 16

AdoMet-dependent rRNA methyltransferase SPB1

Nucleolar complex-associated protein 3

rRNA-processing protein EBP2

Putative 60S ribosomal protein

60S ribosomal subunit-like protein

Putative NOC2 family protein

ATP-dependent RNA helicase DBP10

rRNA-processing protein

60S ribosomal protein L3-like protein

60S ribosomal protein L4-like protein

60S ribosomal protein L6

60S ribosomal protein L8

60S ribosomal protein l9-like protein

60S ribosomal protein L12-like protein

60S ribosomal protein L13

60S ribosomal protein L14-like protein

Ribosomal protein L15

60S ribosomal protein L16-like protein

60S ribosomal protein l17-like protein

Ribosomal protein L18-like protein

Ribosomal protein L19

60S ribosomal protein L20

60S ribosomal protein l21-like protein

60S ribosomal protein L22-like protein

60S ribosomal protein l23-like protein

60S ribosomal protein L25-like protein

60S ribosomal protein L26-like protein

60S ribosomal protein L27

60S ribosomal protein l30-like protein

Putative 60S ribosomal protein

60S ribosomal protein L32-like protein

60S ribosomal protein l33-like protein

Ribosomal protein l34-like protein

dolichyl-diphosphooligosaccharide--protein glycotransferase

60S ribosomal protein L36

Ribosomal protein L37

60S ribosomal protein L38-like protein

60S ribosomal protein L39

Ribosomal protein

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5jpq.1 | 5oql.1 | 6rxt.1 | 6rxu.17 | 6rxv.17 | 6rxy.1 | 6rxz.17 | 7olc.5 | 7olc.6 | 7olc.8 | 7olc.9 | 7olc.10 | 7olc.11 | 7olc.14 | 7olc.15 | 7olc.16 | 7olc.17 | 7olc.18 | 7olc.19 | 7olc.20 | 7olc.22 | 7olc.23 | 7olc.24 | 7olc.25 | 7olc.27 | 7olc.28 | 7olc.29 | 7olc.32 | 7olc.33 | 7olc.34  more...