SMTL ID : 8pv1.1

Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
3 x MG: MAGNESIUM ION(Non-covalent)
5 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Thoms, M. et al., Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep. (2023)
Release Date
2023-11-15
Peptides
Utp30: E
Large ribosomal subunit protein uL10: F
Nucleolar GTP-binding protein 1: G
Putative RNA-binding protein: H
Pescadillo homolog: I
Ribosome biogenesis protein NSA2 homolog: J
Putative GTP binding protein: K
60S ribosomal protein l7-like protein: L1
Eukaryotic translation initiation factor 6: M
DUF2423 domain-containing protein: N
Ribosome biogenesis protein RLP24: O
Zinc finger domain-containing protein: P
Nucleolar GTP-binding protein 2: Q
Ribosome biogenesis protein NOP53: R
Ribosome production factor 2 homolog: S
Ribosome biogenesis regulatory protein: T
Ribosome assembly protein 4: U
rRNA-processing protein: V
60S ribosomal protein L2-like protein: W
60S ribosomal protein L3-like protein: X
60S ribosomal protein L4-like protein: Y
60S ribosomal protein l5-like protein: Z
60S ribosomal protein L6: 0
60S ribosomal protein L8: 2
60S ribosomal protein l9-like protein: 3
Putative ribosomal protein: 4
60S ribosomal protein L12-like protein: 5
60S ribosomal protein L13: 6
60S ribosomal protein L14-like protein: 7
Ribosomal protein L15: 8
60S ribosomal protein L16-like protein: 9
60S ribosomal protein l17-like protein: a
Ribosomal protein L18-like protein: b
Ribosomal protein L19: c
60S ribosomal protein L20: d
60S ribosomal protein l21-like protein: e
60S ribosomal protein L22-like protein: f
60S ribosomal protein l23-like protein: g
60S ribosomal protein L25-like protein: h
60S ribosomal protein L26-like protein: i
60S ribosomal protein L27: j
60S ribosomal protein L28-like protein: k
60S ribosomal protein l30-like protein: l
Putative 60S ribosomal protein: m
60S ribosomal protein L32-like protein: n
60S ribosomal protein l33-like protein: o
Ribosomal protein l34-like protein: p
dolichyl-diphosphooligosaccharide--protein glycotransferase: q
60S ribosomal protein L36: r
Ribosomal protein L37: s
60S ribosomal protein L38-like protein: t
Ribosomal protein eL39: u
60S ribosomal protein L43-like protein: v
Putative 60S ribosomal protein: w
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
E
CB
F
CF
G
CH
H
CI
I
CJ
J
CK
K
CL
L
CM
1
LF
M
CN
N
CO
O
CQ
P
Cb
Q
Cd
R
Ce
S
Cf
T
Cg
U
Ch
V
Cz
W
LA
X
LB
Y
LC
Z
LD
0
LE
2
LG
3
LH
4
LJ
5
LK
6
LL
7
LM
8
LN
9
LO
a
LP
b
LQ
c
LR
d
LS
e
LT
f
LU
g
LV
h
LX
i
LY
j
LZ
k
La
l
Lc
m
Ld
n
Le
o
Lf
p
Lg
q
Lh
r
Li
s
Lj
t
Lk
u
Ll
v
Lp
w
Lq

Utp30

Large ribosomal subunit protein uL10

Nucleolar GTP-binding protein 1

Putative RNA-binding protein

Pescadillo homolog

Ribosome biogenesis protein NSA2 homolog

Putative GTP binding protein

60S ribosomal protein l7-like protein

Eukaryotic translation initiation factor 6

DUF2423 domain-containing protein

Ribosome biogenesis protein RLP24

Zinc finger domain-containing protein

Nucleolar GTP-binding protein 2

Ribosome biogenesis protein NOP53

Ribosome production factor 2 homolog

Ribosome biogenesis regulatory protein

Ribosome assembly protein 4

rRNA-processing protein

60S ribosomal protein L2-like protein

60S ribosomal protein L3-like protein

60S ribosomal protein L4-like protein

60S ribosomal protein l5-like protein

60S ribosomal protein L6

60S ribosomal protein L8

60S ribosomal protein l9-like protein

Putative ribosomal protein

60S ribosomal protein L12-like protein

60S ribosomal protein L13

60S ribosomal protein L14-like protein

Ribosomal protein L15

60S ribosomal protein L16-like protein

60S ribosomal protein l17-like protein

Ribosomal protein L18-like protein

Ribosomal protein L19

60S ribosomal protein L20

60S ribosomal protein l21-like protein

60S ribosomal protein L22-like protein

60S ribosomal protein l23-like protein

60S ribosomal protein L25-like protein

60S ribosomal protein L26-like protein

60S ribosomal protein L27

60S ribosomal protein L28-like protein

60S ribosomal protein l30-like protein

Putative 60S ribosomal protein

60S ribosomal protein L32-like protein

60S ribosomal protein l33-like protein

Ribosomal protein l34-like protein

dolichyl-diphosphooligosaccharide--protein glycotransferase

60S ribosomal protein L36

Ribosomal protein L37

60S ribosomal protein L38-like protein

Ribosomal protein eL39

60S ribosomal protein L43-like protein

Putative 60S ribosomal protein

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