SMTL ID : 6rxy.1

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state a

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-2-1-1-1-1-1-1-1-2-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain P: C.103, C.132, H.134, C.142, R.146 3 PLIP interactions: 3 interactions with chain P Metal complexes: P:C.103, P:H.134, P:C.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, J. et al., Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration. Mol.Cell (2019)

Release Date

2019-08-14

Peptides

Periodic tryptophan protein 2-like protein: A
Utp2: B
Utp3: C
Utp4: D
Utp6: E
Utp7: F
Utp10: G
U3 small nucleolar RNA-associated protein 11: H
Utp12: I
Utp13: J
Utp14: K
Utp15: L
Utp17: M
Utp18: N
Utp21: O
Utp24: P
Utp30: Q
Nop1: RS
Nop56: T
Nop58: U
Snu13: VW
Rrp9: X
RNA 3'-terminal phosphate cyclase-like protein: Y
Bms1: Z
Imp3: 0
Imp4: 1
Mpp10: 2
Sof1: 3
Emg1: 45
KRR1 small subunit processome component: 6
Pre-rRNA-processing protein PNO1: 7
Kre33: 89
Fcf2: a
40S ribosomal protein s5-like protein: b
40S ribosomal protein S7: c
40S ribosomal protein s9-like protein: d
40S ribosomal protein S13-like protein: e
40S ribosomal protein S14-like protein: f
40S ribosomal protein S16-like protein: g
40S ribosomal protein S22-like protein: h
40S ribosomal protein s23-like protein: i
40S ribosomal protein S28-like protein: j
Faf1: k
U3 small nucleolar RNA-associated protein 22: n
Rrp7: o
Utp8: p
Utp5: qu
Noc4: r
Rps18: s
Enp1: t
Utp16: v
Rrp5: w

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
UA

B
UB

C
UC

D
UD

E
UF

F
UG

G
UJ

H
UK

I
UL

J
UM

K
UN

L
UO

M
UQ

N
UR

O
UU

P
UX

Q
UZ

R
CA

S
CB

T
CC

U
CD

V
CE

W
CF

X
CG

Y
CH

Z
CI

0
CJ

1
CK

2
CL

3
CM

4
CN

5
CO

6
CP

7
CQ

8
CR

9
CS

a
CT

b
Cc

c
Ce

d
Cg

e
Ch

f
Ci

g
Cj

h
Cm

i
Cn

j
Cp

k
CU

n
UV

o
CV

p
UH

q
UE

u
UI

r
US

s
Cl

t
CX

v
UP

w
Cz

Periodic tryptophan protein 2-like protein

Utp2

Utp3

Utp4

Utp6

Utp7

Utp10

U3 small nucleolar RNA-associated protein 11

Utp12

Utp13

Utp14

Utp15

Utp17

Utp18

Utp21

Utp24

Utp30

Nop1

Nop56

Nop58

Snu13

Rrp9

RNA 3'-terminal phosphate cyclase-like protein

Bms1

Imp3

Imp4

Mpp10

Sof1

Emg1

KRR1 small subunit processome component

Pre-rRNA-processing protein PNO1

Kre33

Fcf2

40S ribosomal protein s5-like protein

40S ribosomal protein S7

40S ribosomal protein s9-like protein

40S ribosomal protein S13-like protein

40S ribosomal protein S14-like protein

40S ribosomal protein S16-like protein

40S ribosomal protein S22-like protein

40S ribosomal protein s23-like protein

40S ribosomal protein S28-like protein

Faf1

U3 small nucleolar RNA-associated protein 22

Rrp7

Utp8

Utp5

Noc4

Rps18

Enp1

Utp16

Rrp5

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