SMTL ID : 5osx.2 (3 other biounits)

Translation initiation factor 4E in complex with m7G(5'S)ppp(5'S)G mRNA 5' cap analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x AKW: [(2~{S},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl-[[[(3~{R},4~{S})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-phosphinic acid(Non-covalent)

AKW.1: 6 residues within 4Å: Chain A: W.29, M.74, W.75, E.76, R.130, K.135 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:W.75, A:R.130, A:K.135, A:K.135 Water bridges: A:R.85, A:R.85, A:N.128 Salt bridges: A:E.76, A:R.130, A:K.135 pi-Stacking: A:W.29, A:W.29, A:W.29, A:W.75, A:W.75 pi-Cation interactions: A:W.29

1 x K: POTASSIUM ION(Non-covalent)

K.2: 1 residues within 4Å: Chain A: E.72 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wojtczak, B.A. et al., 5'-Phosphorothiolate Dinucleotide Cap Analogues: Reagents for Messenger RNA Modification and Potent Small-Molecular Inhibitors of Decapping Enzymes. J. Am. Chem. Soc. (2018)

Release Date

2018-05-02

Peptides

Eukaryotic translation initiation factor 4E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Eukaryotic translation initiation factor 4E

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