SMTL ID : 5r4u.1 (1 other biounit)

PanDDA analysis group deposition -- Crystal Structure of HUMAN CLEAVAGE FACTOR IM in complex with EN08775-43

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

2 x RWM: (5S)-5-methyl-5-[(3-phenyl-1,2-oxazol-5-yl)methyl]pyrrolidine-2,4-dione(Non-covalent)

RWM.1: 11 residues within 4Å: Chain A: L.23, E.25, K.26, L.67, L.76, G.78, G.79, E.80, E.97, I.98, Y.161 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.67, A:I.98, A:I.98, A:Y.161, A:Y.161 Hydrogen bonds: A:K.26, A:E.80 pi-Cation interactions: A:K.75 RWM.6: 11 residues within 4Å: Chain B: L.23, E.25, K.26, L.67, L.76, G.78, G.79, E.80, E.97, I.98, Y.161 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.67, B:I.98, B:I.98, B:Y.161, B:Y.161 Hydrogen bonds: B:K.26, B:E.80 pi-Cation interactions: B:K.75

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: M.46, W.119, H.141 No protein-ligand interaction detected (PLIP) ZN.3: 1 residues within 4Å: Chain A: H.59 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.59 ZN.7: 3 residues within 4Å: Chain B: M.46, W.119, H.141 No protein-ligand interaction detected (PLIP) ZN.8: 1 residues within 4Å: Chain B: H.59 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.59

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 7 residues within 4Å: Chain A: E.4, S.190, F.192, N.193 Chain B: N.117, W.119, H.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.193 Water bridges: A:F.192, A:F.194, A:F.194 ACT.5: 5 residues within 4Å: Chain A: F.169, E.170, Y.172, D.173, N.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.169 ACT.9: 7 residues within 4Å: Chain A: N.117, W.119, H.141 Chain B: E.4, S.190, F.192, N.193 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.193 Water bridges: B:F.192, B:F.194, B:F.194 ACT.10: 5 residues within 4Å: Chain B: F.169, E.170, Y.172, D.173, N.174 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kidd, S.L. et al., PanDDA analysis group deposition. To Be Published

Release Date

2020-07-08

Peptides

Cleavage and polyadenylation specificity factor subunit 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cleavage and polyadenylation specificity factor subunit 5

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