SMTL ID : 5r4u.2 (1 other biounit)

PanDDA analysis group deposition -- Crystal Structure of HUMAN CLEAVAGE FACTOR IM in complex with EN08775-43

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 2 residues within 4Å: Chain A: E.58, H.63 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.58, A:H.63, H2O.1, H2O.2 ZN.2: 1 residues within 4Å: Chain A: H.134 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.134, H2O.4 ZN.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.4: 2 residues within 4Å: Chain A: W.119, I.131 No protein-ligand interaction detected (PLIP) ZN.6: 2 residues within 4Å: Chain B: E.58, H.63 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.58, B:H.63, H2O.5, H2O.7 ZN.7: 1 residues within 4Å: Chain B: H.134 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.134, H2O.9 ZN.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.9: 2 residues within 4Å: Chain B: W.119, I.131 No protein-ligand interaction detected (PLIP)

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 4 residues within 4Å: Chain A: F.169, Y.172 Chain B: Y.128, Y.130 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.172, B:Y.128 Hydrogen bonds: A:Y.172 ACT.10: 4 residues within 4Å: Chain A: Y.128, Y.130 Chain B: F.169, Y.172 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.172, A:Y.128 Hydrogen bonds: B:Y.172, A:Y.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kidd, S.L. et al., PanDDA analysis group deposition. To Be Published

Release Date

2020-07-08

Peptides

Cleavage and polyadenylation specificity factor subunit 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Cleavage and polyadenylation specificity factor subunit 5

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