SMTL ID : 5r67.2 (1 other biounit)

PanDDA analysis group deposition -- Crystal Structure of HUMAN CLEAVAGE FACTOR IM in complex with FMOPL000589a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: E.58, H.63 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.58, A:H.63, H2O.1 ZN.2: 1 residues within 4Å: Chain A: H.134 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.134, H2O.4 ZN.3: 1 residues within 4Å: Chain A: H.134 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.134 ZN.4: 3 residues within 4Å: Chain A: M.46, W.119, H.141 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.141 ZN.6: 2 residues within 4Å: Chain B: E.58, H.63 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.58, B:H.63, H2O.5 ZN.7: 1 residues within 4Å: Chain B: H.134 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.134, H2O.9 ZN.8: 1 residues within 4Å: Chain B: H.134 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.134 ZN.9: 3 residues within 4Å: Chain B: M.46, W.119, H.141 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.141

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 3 residues within 4Å: Chain A: F.169, Y.172 Chain B: Y.130 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.172 Hydrogen bonds: A:Y.172 ACT.10: 3 residues within 4Å: Chain A: Y.130 Chain B: F.169, Y.172 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.130, B:Y.172 Hydrophobic interactions: B:Y.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talon, R. et al., PanDDA analysis group deposition. To Be Published

Release Date

2020-04-15

Peptides

Cleavage and polyadenylation specificity factor subunit 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Cleavage and polyadenylation specificity factor subunit 5

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