SMTL ID : 5r67.1 (1 other biounit)

PanDDA analysis group deposition -- Crystal Structure of HUMAN CLEAVAGE FACTOR IM in complex with FMOPL000589a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: M.46, W.119, H.141 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.141, H2O.5, H2O.5 ZN.2: 1 residues within 4Å: Chain A: H.59 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.59 ZN.6: 3 residues within 4Å: Chain B: M.46, W.119, H.141 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.141, H2O.10, H2O.11 ZN.7: 1 residues within 4Å: Chain B: H.59 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.59

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: E.4, F.192, N.193 Chain B: N.117, H.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.193 Water bridges: A:E.4, A:E.4, A:F.194 ACT.4: 5 residues within 4Å: Chain A: F.169, E.170, Y.172, D.173, N.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.174 ACT.8: 5 residues within 4Å: Chain A: N.117, H.141 Chain B: E.4, F.192, N.193 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.193 Water bridges: B:E.4, B:E.4, B:F.194 ACT.9: 5 residues within 4Å: Chain B: F.169, E.170, Y.172, D.173, N.174 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.174

2 x S6V: 1-[2-(2-oxidanylidenepyrrolidin-1-yl)ethyl]-3-phenyl-urea(Non-covalent)

S6V.5: 8 residues within 4Å: Chain A: R.33, E.51, L.67, K.75, L.76, G.78, I.98, Y.161 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.67, A:K.75, A:I.98, A:I.98, A:Y.161, A:Y.161 Hydrogen bonds: A:E.51, A:L.76, A:L.76, A:G.78 pi-Cation interactions: A:K.75 S6V.10: 8 residues within 4Å: Chain B: R.33, E.51, L.67, K.75, L.76, G.78, I.98, Y.161 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.67, B:K.75, B:I.98, B:I.98, B:Y.161, B:Y.161 Hydrogen bonds: B:L.76, B:L.76, B:G.78 pi-Cation interactions: B:K.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talon, R. et al., PanDDA analysis group deposition. To Be Published

Release Date

2020-04-15

Peptides

Cleavage and polyadenylation specificity factor subunit 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cleavage and polyadenylation specificity factor subunit 5

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