SMTL ID : 5r65.2 (1 other biounit)

PanDDA analysis group deposition -- Crystal Structure of HUMAN CLEAVAGE FACTOR IM in complex with FMOPL000387a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 2 residues within 4Å: Chain A: E.58, H.63 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.58, A:H.63 ZN.2: 1 residues within 4Å: Chain A: H.134 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.134, H2O.4 ZN.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.4: 3 residues within 4Å: Chain A: M.46, W.119, H.141 No protein-ligand interaction detected (PLIP) ZN.7: 2 residues within 4Å: Chain B: E.58, H.63 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.58, B:H.63 ZN.8: 1 residues within 4Å: Chain B: H.134 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.134, H2O.9 ZN.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.10: 3 residues within 4Å: Chain B: M.46, W.119, H.141 No protein-ligand interaction detected (PLIP)

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 5 residues within 4Å: Chain A: F.169, Y.172, D.173 Chain B: Y.128, Y.130 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.172, B:Y.128 Hydrogen bonds: A:D.173 ACT.11: 5 residues within 4Å: Chain A: Y.128, Y.130 Chain B: F.169, Y.172, D.173 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.128, B:Y.172 Hydrogen bonds: A:Y.130, B:D.173

2 x K0Y: methyl N-(5-methyl-1,2-oxazole-3-carbonyl)glycinate(Non-covalent)

K0Y.6: 10 residues within 4Å: Chain A: T.49, E.51, L.67, K.75, L.76, P.77, G.78, I.98, K.142, Y.161 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.161 Hydrogen bonds: A:L.76, A:G.78 Salt bridges: A:K.75, A:K.142 K0Y.12: 10 residues within 4Å: Chain B: T.49, E.51, L.67, K.75, L.76, P.77, G.78, I.98, K.142, Y.161 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.161 Hydrogen bonds: B:E.51, B:L.76, B:G.78 Salt bridges: B:K.75, B:K.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talon, R. et al., PanDDA analysis group deposition. To Be Published

Release Date

2020-04-15

Peptides

Cleavage and polyadenylation specificity factor subunit 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Cleavage and polyadenylation specificity factor subunit 5

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