SMTL ID : 5sjc.1

Crystal Structure of human phosphodiesterase 10 in complex with 4-chloro-2,5-dimethyl-N-(2-phenylimidazo[1,2-a]pyrimidin-7-yl)pyrazole-3-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.83, H.117, D.118, D.228 Ligands: ZN.2, MG.4 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.83, A:H.117, A:D.118, A:D.228, H2O.3, H2O.5 ZN.2: 4 residues within 4Å: Chain A: D.118, H.149 Ligands: ZN.1, MG.4 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.118, H2O.2, H2O.3, H2O.3, H2O.4, H2O.5

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: H.79 Ligands: MG.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.79, H2O.5, H2O.5, H2O.5 MG.4: 5 residues within 4Å: Chain A: D.118, H.149 Ligands: ZN.1, ZN.2, MG.3 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.118, H2O.2, H2O.3, H2O.3, H2O.4, H2O.5

1 x K0R: 4-chloro-1,3-dimethyl-N-[(4R)-2-phenylimidazo[1,2-a]pyrimidin-7-yl]-1H-pyrazole-5-carboxamide(Non-covalent)

K0R.5: 14 residues within 4Å: Chain A: Y.78, L.229, S.231, I.246, Y.247, F.250, P.266, M.267, K.272, E.275, V.276, G.279, Q.280, F.283 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.246, A:P.266, A:M.267, A:E.275, A:F.283 Hydrogen bonds: A:Y.247, A:Q.280 Water bridges: A:Y.78 Halogen bonds: A:Q.280, A:Q.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Flohr, A. et al., Crystal Structure of a human phosphodiesterase 10 complex. To be published

Release Date

2022-10-12

Peptides

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A

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