SMTL ID : 5t0h.1

Structural basis for dynamic regulation of the human 26S proteasome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-oligomer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: D.176, V.177, G.178, C.180, P.217, P.218, G.219, T.220, G.221, K.222, G.382, R.386 Chain B: D.317, P.344 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.178, A:T.220, A:G.221, A:R.386, A:R.386, B:D.317 ADP.2: 15 residues within 4Å: Chain B: D.186, I.187, G.188, G.229, T.230, G.231, K.232, T.233, I.364, I.367, H.368, G.392, A.393, K.396 Chain C: R.302 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:D.186, B:G.188, B:G.229, B:K.232, B:T.233, B:T.233, B:K.396 Salt bridges: B:K.232, C:R.302, C:R.302 ADP.3: 14 residues within 4Å: Chain C: I.143, G.144, G.185, T.186, G.187, K.188, T.189, L.190, E.242, I.320, H.324, G.348, V.351, K.352 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:G.144, C:G.187, C:T.189, C:T.189, C:T.189, C:L.190, C:E.242, C:E.242, C:K.352 Salt bridges: C:K.188, C:K.188 ADP.4: 17 residues within 4Å: Chain D: I.167, M.170, P.207, C.210, G.211, K.212, T.213, M.214, D.265, E.266, N.376, S.377 Chain E: D.279, R.305, P.306, G.307, R.308 13 PLIP interactions: 6 interactions with chain E, 7 interactions with chain D Hydrogen bonds: E:R.305, E:R.305, E:P.306, E:R.308, D:G.211, D:T.213, D:T.213, D:T.213, D:E.266, D:S.377 Salt bridges: E:R.308, E:R.308, D:K.212 ADP.5: 15 residues within 4Å: Chain E: P.189, G.191, T.192, G.193, K.194, T.195, L.196, I.326, H.330, G.354, A.355 Chain F: D.318, A.341, R.344, R.347 14 PLIP interactions: 10 interactions with chain E, 4 interactions with chain F Hydrogen bonds: E:T.192, E:G.193, E:K.194, E:T.195, E:T.195, E:L.196, E:H.330, E:G.354, E:A.355, F:A.341, F:R.344 Salt bridges: E:K.194, F:R.347, F:R.347 ADP.6: 19 residues within 4Å: Chain A: D.307, G.335 Chain F: I.188, G.227, P.228, P.229, G.230, T.231, G.232, K.233, T.234, L.235, T.332, N.333, I.365, H.369, G.393, A.394, K.397 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:G.227, F:G.232, F:K.233, F:T.234, F:T.234, F:T.234, F:T.332, F:H.369, F:K.397 Salt bridges: F:K.233, F:K.233

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 5 residues within 4Å: Chain 2: V.81, H.112, H.114, S.122, D.125 1 PLIP interactions: 1 interactions with chain 2 Metal complexes: 2:H.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, S. et al., Structural basis for dynamic regulation of the human 26S proteasome. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-10-19

Peptides

26S protease regulatory subunit 7: A
26S protease regulatory subunit 4: B
26S protease regulatory subunit 8: C
26S protease regulatory subunit 6B: D
26S protease regulatory subunit 10B: E
26S protease regulatory subunit 6A: F
Proteasome subunit alpha type-6: G
Proteasome subunit alpha type-2: H
Proteasome subunit alpha type-4: I
Proteasome subunit alpha type-7: J
Proteasome subunit alpha type-5: K
Proteasome subunit alpha type-1: L
Proteasome subunit alpha type-3: M
Proteasome subunit beta type-6: N
Proteasome subunit beta type-7: O
Proteasome subunit beta type-3: P
Proteasome subunit beta type-2: Q
Proteasome subunit beta type-5: R
Proteasome subunit beta type-1: S
Proteasome subunit beta type-4: T
26S proteasome non-ATPase regulatory subunit 1: U
26S proteasome non-ATPase regulatory subunit 3: V
26S proteasome non-ATPase regulatory subunit 12: W
26S proteasome non-ATPase regulatory subunit 11: X
26S proteasome non-ATPase regulatory subunit 6: Y
26S proteasome non-ATPase regulatory subunit 7: Z
26S proteasome non-ATPase regulatory subunit 13: 0
26S proteasome non-ATPase regulatory subunit 4: 1
26S proteasome non-ATPase regulatory subunit 14: 2
26S proteasome non-ATPase regulatory subunit 8: 3
26S proteasome complex subunit DSS1: 4
26S proteasome non-ATPase regulatory subunit 2: 5

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

4
e

5
f

26S protease regulatory subunit 7

26S protease regulatory subunit 4

26S protease regulatory subunit 8

26S protease regulatory subunit 6B

26S protease regulatory subunit 10B

26S protease regulatory subunit 6A

Proteasome subunit alpha type-6

Proteasome subunit alpha type-2

Proteasome subunit alpha type-4

Proteasome subunit alpha type-7

Proteasome subunit alpha type-5

Proteasome subunit alpha type-1

Proteasome subunit alpha type-3

Proteasome subunit beta type-6

Proteasome subunit beta type-7

Proteasome subunit beta type-3

Proteasome subunit beta type-2

Proteasome subunit beta type-5

Proteasome subunit beta type-1

Proteasome subunit beta type-4

26S proteasome non-ATPase regulatory subunit 1

26S proteasome non-ATPase regulatory subunit 3

26S proteasome non-ATPase regulatory subunit 12

26S proteasome non-ATPase regulatory subunit 11

26S proteasome non-ATPase regulatory subunit 6

26S proteasome non-ATPase regulatory subunit 7

26S proteasome non-ATPase regulatory subunit 13

26S proteasome non-ATPase regulatory subunit 4

26S proteasome non-ATPase regulatory subunit 14

26S proteasome non-ATPase regulatory subunit 8

26S proteasome complex subunit DSS1

26S proteasome non-ATPase regulatory subunit 2

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