- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- monomer
- Ligands
- 3 x CA: CALCIUM ION(Non-covalent)
CA.1: 8 residues within 4Å:- Chain A: D.138, E.177, D.185, E.187, I.188, G.189, E.190
- Ligands: ZN.2
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.138, A:E.177, A:E.177, A:D.185, A:E.190
CA.3: 3 residues within 4Å:- Chain A: D.57, D.59, Q.61
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.59, A:Q.61, H2O.2, H2O.5, H2O.9
CA.4: 5 residues within 4Å:- Chain A: Y.193, T.194, I.197, S.198, D.200
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:Y.193, A:I.197, A:D.200, H2O.3, H2O.11
- 6 x ZN: ZINC ION(Non-covalent)
ZN.2: 7 residues within 4Å:- Chain A: E.177, K.182, N.183, P.184, D.185, E.190
- Ligands: CA.1
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190, H2O.3, H2O.4
ZN.5: 6 residues within 4Å:- Chain A: H.142, E.143, H.146, Y.157, E.166
- Ligands: ZN.6
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.142, A:H.146, A:E.166, H2O.4
ZN.6: 4 residues within 4Å:- Chain A: Y.157, E.166, H.231
- Ligands: ZN.5
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:H.231, H2O.2, H2O.4, H2O.12, H2O.13
ZN.7: 3 residues within 4Å:- Chain A: D.226, V.230, H.231
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.226, A:H.231, H2O.9, H2O.11
ZN.8: 7 residues within 4Å:- Chain A: S.206, K.239, L.243
- Ligands: ZN.9, CL.10, CL.11, CL.12
No protein-ligand interaction detected (PLIP)ZN.9: 7 residues within 4Å:- Chain A: K.239, T.249, H.250, Y.251
- Ligands: ZN.8, CL.12, CL.13
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.250, H2O.4
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.10: 8 residues within 4Å:- Chain A: K.239, Y.242, L.243, G.247, G.248, T.249
- Ligands: ZN.8, CL.11
Ligand excluded by PLIPCL.11: 6 residues within 4Å:- Chain A: S.206, D.207, K.239
- Ligands: ZN.8, CL.10, CL.12
Ligand excluded by PLIPCL.12: 8 residues within 4Å:- Chain A: D.207, D.215, K.239, H.250
- Ligands: ZN.8, ZN.9, CL.11, CL.13
Ligand excluded by PLIPCL.13: 5 residues within 4Å:- Chain A: T.249, H.250, Y.251
- Ligands: ZN.9, CL.12
Ligand excluded by PLIP- 8 x MOH: METHANOL(Non-functional Binders)
MOH.14: 3 residues within 4Å:- Chain A: R.285, V.289, K.307
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.285, A:R.285
MOH.15: 5 residues within 4Å:- Chain A: E.160, Y.217, N.280, F.281, S.282
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.217, A:Y.217, A:F.281, A:S.282
MOH.16: 4 residues within 4Å:- Chain A: G.212, D.213, P.214, K.219
No protein-ligand interaction detected (PLIP)MOH.17: 7 residues within 4Å:- Chain A: Y.274, L.275, T.276, S.279, Q.283, A.287
- Ligands: MOH.18
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.279
- Water bridges: A:Q.283
MOH.18: 5 residues within 4Å:- Chain A: Y.274, A.286, A.287, Q.290
- Ligands: MOH.17
2 PLIP interactions:2 interactions with chain A- Water bridges: A:Y.274, A:A.287
MOH.19: 4 residues within 4Å:- Chain A: I.258, K.262, Q.301, E.302
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.262
- Water bridges: A:Q.301
MOH.20: 4 residues within 4Å:- Chain A: T.299, S.300, Q.301, A.304
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.299
MOH.21: 8 residues within 4Å:- Chain A: Y.46, Y.106, S.107, Q.108, G.109, Y.110, D.124, G.125
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.109
- Water bridges: A:S.107, A:D.124
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Juers, D.H. et al., The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order. Acta Crystallogr D Struct Biol (2018)
- Release Date
- 2017-03-08
- Peptides
- Thermolysin: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
SMTL ID : 5uue.1
Tetragonal thermolysin cryocooled to 100 K with 50% methanol as cryoprotectant
Thermolysin
Related Entries With Identical Sequence
1kei.1 | 1kjo.1 | 1kjp.1 | 1kkk.1 | 1kl6.1 | 1kr6.1 | 1kro.1 | 1ks7.1 | 1kto.1 | 1y3g.1 | 2whz.1 | 2wi0.1 | 3dnz.1 | 3do0.1 | 3do1.1 | 3do2.1 | 3fb0.1 | 3fbo.1 | 3fgd.1 | 3flf.1 | 3fv4.1 | 3fvp.1 | 3fxp.1 | 3fxs.1 | 3ls7.1 | 3ms3.1 | 3msa.1 | 3msf.1 | 3msn.1 | 3n21.1 more...less...3nn7.1 | 3qgo.1 | 3qh1.1 | 3qh5.1 | 3ssb.1 | 3ssb.2 | 3t73.1 | 3t74.1 | 3t87.1 | 3t8c.1 | 3t8d.1 | 3t8f.1 | 3t8g.1 | 3t8h.1 | 4d91.1 | 4d9w.1 | 4h57.1 | 4mtw.1 | 4mwp.1 | 4mxj.1 | 4mzn.1 | 4n4e.1 | 4n5p.1 | 4n66.1 | 4oi5.1 | 4ow3.1 | 4tnl.1 | 5dlh.1 | 5dpe.1 | 5dpf.1 | 5fsj.1 | 5fsp.1 | 5fss.1 | 5js3.1 | 5jss.1 | 5jt9.1 | 5jvi.1 | 5jxn.1 | 5k7t.1 | 5l3u.1 | 5l41.1 | 5l8p.1 | 5lif.1 | 5lvd.1 | 5lwd.1 | 5m5f.1 | 5m69.1 | 5m9w.1 | 5ma7.1 | 5mnr.1 | 5n2t.1 | 5n2x.1 | 5n2z.1 | 5n31.1 | 5n34.1 | 5n3v.1 | 5n3y.1 | 5o8n.1 | 5onp.1 | 5onq.1 | 5onr.1 | 5t9i.1 | 5t9k.1 | 5t9q.1 | 5tac.1 | 5tad.1 | 5tae.1 | 5tai.1 | 5taj.1 | 5tak.1 | 5un3.1 | 5uu7.1 | 5uu8.1 | 5uu9.1 | 5uua.1 | 5uub.1 | 5uuc.1 | 5uud.1 | 5wr2.1 | 5wr3.1 | 5wr4.1 | 5wr5.1 | 5wr6.1 | 6d5n.1 | 6d5o.1 | 6d5p.1 | 6d5q.1 | 6d5r.1 | 6d5s.1 | 6d5t.1 | 6d5u.1 | 6fj2.1 | 6ghx.1 | 6ig7.1 | 6lzn.1 | 6lzo.1 | 6n4w.1 | 6n4z.1 | 6qar.1 | 6qf2.1 | 6qf3.1 | 6sb9.1 | 6sbk.1 | 6sc0.1 | 6sc1.1 | 6sc3.1 | 6sck.1 | 6scu.1 | 6sel.1 | 6y4i.1 | 6yi6.1 | 6ymr.1 | 6yms.1 | 6zhj.1 | 7akn.1 | 8zm4.1 | 8zm5.1 | 8zm6.1 | 9f56.1